PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00037g02016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 390aa    MW: 41687 Da    PI: 8.9286
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00037g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.61.8e-4389164176
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                               +CqvegCeadls++k y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Niben101Scf00037g02016.1  89 RCQVEGCEADLSDVKAYYSRHKVCATHSKSPVVIVAGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 164
                               6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-3583151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.49687164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-4188168IPR004333Transcription factor, SBP-box
PfamPF031108.0E-3390163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNGLSKSEME LLASASSSTS TTSTSPDSPP NTLKCGQKIY FEHVGPQHLK SATVSSSSSS  60
PPPVTGTPAP VMSKKGRGGG VVQGRQPPRC QVEGCEADLS DVKAYYSRHK VCATHSKSPV  120
VIVAGLEQRF CQQCSRFHRL PEFDQGKRSC RRRLAGHNER RRKPPPGSLL SNRYGSLSSS  180
IFENNGRSGS FLVDFTAYPN LTGGTWPNTR SSERGWDNQS NASGKLLQSH WLNNSENPTS  240
DLVLQGSVSR GANYSGPGII PSGNCFSGVS DSSGALSLLS NESWGSRNQS SSLGVNGLCN  300
TDGGHTVQPS SSHAAPINHY SGPLWGFKGN EASSSSHAIL PDLGLGHISQ HAVNQYSAEL  360
GMVQHSGRQY MELEHSKGYD SSVQNVHWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31901631184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019243037.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A1J6IJ460.0A0A1J6IJ46_NICAT; Squamosa promoter-binding-like protein 9
STRINGXP_009792000.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-58squamosa promoter binding protein-like 9