PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00034g01012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 951aa    MW: 107319 Da    PI: 9.3351
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00034g01012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-10471261398
                               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               +++ ++p +fa+++ ++  ++  + le ++g++Wev++    ++g+++l+ GW++F +   +  g f++F ++ rs f  +v++f
  Niben101Scf00034g01012.1  47 LCMQRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQIYLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVTIF 125
                               57779*********5454444..***************..999999**************************999999..99998 PP

                               - CS
                        B3  98 r 98 
                               +
  Niben101Scf00034g01012.1 126 D 126
                               7 PP
2B340.74.1e-13401491397
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               + +++  v++s+   ++ +fa+++  ++ +    +l+ +   sW+v++ + ++s++  +++GWk Fv +n+Lk gD++vF+l++ 
  Niben101Scf00034g01012.1 401 THTKNIKVGTSQEDNISATFARKYFRDEYS--NFVLRVPGRGSWSVEC-FLGTSNA-QIRSGWKAFVLDNKLKYGDVCVFELIKL 481
                               56667788888888999*******777555..69**************.5666655.489*********************9976 PP

                               SEE..EEEEE CS
                        B3  88 sefelvvkvf 97 
                               ++  + v++f
  Niben101Scf00034g01012.1 482 TKLLMDVTIF 491
                               6665666655 PP
3B335.22.2e-11656745699
                               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                ps+v+   rl ++  fa+++  +k ++  l+l+ +    W+vk+ + k++ ++ +   Wk Fv +n+Lk gD++vF+l++ ++ 
  Niben101Scf00034g01012.1 656 QPSYVSIPYRLDISFLFARKYLCEK-CG-FLVLRVPGRGYWSVKYVVGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKP 736
                               5778888888999999999994333.44.6999************999999999999..*********************88777 PP

                               ..EEEEE-S CS
                        B3  91 elvvkvfrk 99 
                                l v++fr+
  Niben101Scf00034g01012.1 737 ILDVTIFRT 745
                               788888885 PP
4B353.44.8e-17857942894
                               -HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   8 sdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               s+v++      l++  + a+++   k++  +++l+++s rsW vk+  + +     lt+GWkeFv +n+LkegD++vF++++rs+
  Niben101Scf00034g01012.1 857 SYVSSAsgpMKLSIMLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGDVCVFERVSRSK 937
                               4444335556688888888888655444..8***************..55555677***********************887766 PP

                               E..EE CS
                        B3  90 felvv 94 
                                 ++v
  Niben101Scf00034g01012.1 938 LLFNV 942
                               64444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1618128IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-1023126No hitNo description
PROSITE profilePS5086310.85635128IPR003340B3 DNA binding domain
SMARTSM010190.00638128IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-1442128IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-748126IPR003340B3 DNA binding domain
PROSITE profilePS508637.923218311IPR003340B3 DNA binding domain
SMARTSM010190.0021225311IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-10229308IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-11233305IPR015300DNA-binding pseudobarrel domain
CDDcd100176.46E-12234309No hitNo description
PROSITE profilePS5086311.096399494IPR003340B3 DNA binding domain
SMARTSM010193.5E-9402494IPR003340B3 DNA binding domain
PfamPF023624.1E-10404486IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-16412492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-14415491IPR015300DNA-binding pseudobarrel domain
CDDcd100177.88E-13416492No hitNo description
Gene3DG3DSA:2.40.330.107.1E-17643744IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-18644744IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.278651746IPR003340B3 DNA binding domain
SMARTSM010195.8E-7654746IPR003340B3 DNA binding domain
CDDcd100173.20E-15655744No hitNo description
PfamPF023621.1E-8656744IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-23842946IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19843945IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-15848945No hitNo description
SMARTSM010191.6E-9853948IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056853948IPR003340B3 DNA binding domain
PfamPF023629.9E-15863944IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MAAKPQLQNS EGSSTAKIKI PQPKFFKIIL SQHERGRLMY ETDPDLLCMQ RIPEDFASRY  60
CKNMLNPVYL EVPTGEVWEV EVVHSQGQIY LGIGWQDFSD FYSISCGHFL MFGYNARSHF  120
NVTIFDLSAS EIEYPYSSAH GIHIPIFYSH ETRHAPERNQ SELDDSVEIL EGIPRSQKAN  180
PIIPDMVENS VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEESMSLKFA  240
RKYFPENYRN LVLRVPGRGS WSVKCTFGTT NAKIFWKAFV MGNKLKPGDV CVFEVIKGAK  300
LLMDITIFPA AGSTPMHKIG REVPGVSDKS VPFSQSRIVQ TKNLKQRRGG ACGFNSKVKA  360
EHGEGTGIEH SFEILCHCPL GQYRKRKRLE RDAEDDVPFD THTKNIKVGT SQEDNISATF  420
ARKYFRDEYS NFVLRVPGRG SWSVECFLGT SNAQIRSGWK AFVLDNKLKY GDVCVFELIK  480
LTKLLMDVTI FPAAGSTPML KIAGEATGVS DCKRKIIKTD IYVPCSPPKV VHTNGLKQRR  540
GEEHDEGTGI ESSVEILGHS PLGHDSKIKR LEEAEDDVSI DIHAKSIKVA NTQEDVASPS  600
FTGKTKKSGE SFRMDRQQSK MVYDRNTSVL VKERSVAYQR ANDFKSENPY VMYFMQPSYV  660
SIPYRLDISF LFARKYLCEK CGFLVLRVPG RGYWSVKYVV GKSKTKICFY WKAFVLDNKL  720
KFGDVCVFEL IKGTKPILDV TIFRTAENKP AHKIDGKLPG VSDCKNKTIK TENSVPCSQS  780
KIGQSRKLNL EKQQKGNLDG FTSKTKEELS EDAVKHVQQS KSSCKGSAVA KEMVLAYQRA  840
KAFTSENPFF ICFMQPSYVS SASGPMKLSI MLPIARKFFA TKHSDVILQN SSKRSWAVKC  900
SLGTVNAKLT SGWKEFVLDN DLKEGDVCVF ERVSRSKLLF NVIIFTSAKG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1462594518144B3 domain-containing transcription factor VRN1
4i1k_B8e-1462594518144B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230742.10.0PREDICTED: uncharacterized protein LOC109211634 isoform X3
TrEMBLA0A1J6IMU60.0A0A1J6IMU6_NICAT; B3 domain-containing transcription factor vrn1
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-22B3 family protein