PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00024g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 301aa MW: 32844.4 Da PI: 10.3253

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00024g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	110	154	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Niben101Scf00024g00006.1 110 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 154 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.08	103	159	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	105	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-17	106	157	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	107	157	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-10	109	154	IPR009057	Homeodomain-like
Pfam	PF00249	5.8E-11	110	154	IPR001005	SANT/Myb domain
CDD	cd00167	6.03E-9	110	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MMSRSSSQSE TNGHNSFTSA GESSPAAASG GGGEIMLFGV RVKVDPMRKS VSLNNLSQYE 60 LPNANENISN NSNAGNNNES SKVADEGYAS ADEAVPHHSG SARERKRGVP WTEDEHKLFL 120 LGLQKVGKGD WRGISRNFVK TRTPTQVASH AQKYFLRRTN LNRRRRRSSL FDITTDSVSV 180 MPIEEKQNLQ QHQVLAPTSL PPVENSKINA FQVTPLPVTF GQGDQINKNS SLFHRPVPVL 240 PLSNSSRIAD FNLNQSSAME ASSLSLTLSL SLNQSQSSST RHSAFQVMSN FNNGESIISV 300 A

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760664.1	1e-168	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	1e-102	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1U7VEB2	1e-167	A0A1U7VEB2_NICSY; transcription factor MYB1R1-like
STRING	XP_009760664.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-54	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]