PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00013g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92250.8 Da    PI: 6.465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00013g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191674357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Niben101Scf00013g01005.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74
                              5679*****************************************************97 PP
2START179.91.5e-561603682205
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 
                               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + 
  Niben101Scf00013g01005.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGIDPT-RVAEILKDRPSWYRDCRAVEVLNMLP 243
                               789*******************************************************.8888888888**************** PP

                               TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
                     START  87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                               ++  g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v+
  Niben101Scf00013g01005.1 244 TAngGTIELLYMQLYAPTTLAPpRDFWLLRYSTVMDDGSLVICERSLGNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIVH 328
                               9999************************************************99988899************************* PP

                               EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               +v+h+dl++++++++lr+l++s+++ ++kt +a+l+++++
  Niben101Scf00013g01005.1 329 IVDHMDLEAWSVPEVLRPLYESSAVLAQKTSMAALRQLRQ 368
                               ************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581175IPR001356Homeobox domain
SMARTSM003892.3E-161379IPR001356Homeobox domain
SuperFamilySSF466893.08E-171377IPR009057Homeodomain-like
CDDcd000868.52E-171676No hitNo description
PfamPF000461.1E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-181874IPR009057Homeodomain-like
CDDcd146861.15E-568107No hitNo description
PROSITE profilePS5084827.152150365IPR002913START domain
CDDcd088753.99E-76154369No hitNo description
Gene3DG3DSA:3.30.530.203.7E-25159365IPR023393START-like domain
SuperFamilySSF559615.77E-38159364No hitNo description
SMARTSM002343.4E-42159369IPR002913START domain
PfamPF018528.7E-54160368IPR002913START domain
PfamPF086701.1E-49694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
KTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGIDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYSTVMDD GSLVICERSL GNTQNGPSMP  300
PVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMDLEAWSV PEVLRPLYES SAVLAQKTSM  360
AALRQLRQIT LEASQPNVTN WGRRPAALRA LSKKLSRGFN EALNGFSSEG WSMLDNDGID  420
DVTILVNSSP DKLIGLNLSF ADEFTSLSNA VLCAKASMLL QSVTPAVLLR FLREHRSEWV  480
DNDIDAYAAA AVKVGPCSLP GARVCNFGGQ VILPLAHTAE HEELLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ MCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP FDSAKEASSP  600
NRTLDLTSAL EIGPAESKVA NNLKSTGVAS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSHFGSL GGLRLPLGTP EAHTLARWIC QSYRHYLGVE LPKLSGEGSE  720
SVLEGLWQHS DAIICCSAKA LPVFTFANQA GLDMLETTLV GLQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLRGGICL SSMGRPVSYE KAVAWKVLNE DDNAHCISFM FVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236029.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1J6K4K20.0A0A1J6K4K2_NICAT; Homeobox-leucine zipper protein athb-15
STRINGXP_009600774.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]