PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15867g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 290aa    MW: 31493 Da    PI: 9.2521
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15867g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3969128362
                    zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               e+ lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGa+rnvPvGgg+r+nk+s+
  Niben101Ctg15867g00004.1  69 EAGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGAMRNVPVGGGCRRNKRSK 128
                               6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3552121IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.69372126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MIFSSFPVYL DHPYLQQLQQ PDHQQGNAGL ENPQLPPPPP PAQVGGGLGS IRPGSMVDRA  60
RMAKIPLPEA GLKCPRCDST NTKFCYFNNY SLSQPRHFCK SCRRYWTRGG AMRNVPVGGG  120
CRRNKRSKSN NNNNNNISKP AGGQLGNSNV IISTSASPSS CSMEITDHQF SQPSTQFTPL  180
MAAFHNLNNY GGGFGTQMGL QIANNNNNNN LLPSLAANFE HTTNLYPFQV QGESTVEVSN  240
GVSQASPPVK MESNSTKHLG SLENNQYWVG ANSWTGFSGL NNSSTTSHIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235411.11e-161PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A1J6K7A11e-159A0A1J6K7A1_NICAT; Dof zinc finger protein dof5.1
STRINGXP_009777580.11e-153(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-42DNA binding with one finger 2.4