PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg15328g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 142aa MW: 16424.9 Da PI: 10.0481 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 92.3 | 7.6e-29 | 47 | 134 | 250 | 337 |
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 s+ F +rf eal +ys+lfd+lea++pre +er+ +E+ +lgre++nv+ace aer+er et+++W+ r+++aGF+++pl+e+++ Niben101Ctg15328g00002.1 47 SPFFITRFREALFHYSSLFDMLEANIPREVHERVLIEKNILGREAKNVIACEAAERIERPETYKQWQIRIMKAGFRQLPLDEEIM 131 678********************************************************************************99 PP GRAS 335 kqa 337 a Niben101Ctg15328g00002.1 132 RMA 134 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.134 | 1 | 142 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-26 | 47 | 134 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
NGVSKGSNGK KQGSKRDVVE LSKDSQAKKQ GGIVVLRWGT GCRGYLSPFF ITRFREALFH 60 YSSLFDMLEA NIPREVHERV LIEKNILGRE AKNVIACEAA ERIERPETYK QWQIRIMKAG 120 FRQLPLDEEI MRMATEHDRC RQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009800214.1 | 1e-55 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_016458641.1 | 1e-55 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | O80933 | 2e-34 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A1S3Z2G9 | 2e-54 | A0A1S3Z2G9_TOBAC; scarecrow-like protein 14 | ||||
TrEMBL | A0A1U7YLT7 | 2e-54 | A0A1U7YLT7_NICSY; scarecrow-like protein 14 | ||||
STRING | XP_009800214.1 | 4e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-36 | GRAS family protein |