PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg15010g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 40941.8 Da PI: 9.6678 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 158 | 207 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Niben101Ctg15010g00002.1 158 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 207 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-22 | 158 | 216 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.712 | 158 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-33 | 158 | 216 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 158 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-38 | 158 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.7E-12 | 159 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.84E-15 | 166 | 217 | No hit | No description |
PRINTS | PR00367 | 9.7E-12 | 181 | 197 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MIQQQIHQEA DYLLSTSSTM PMFTGYSQTR EMSTMVTALT HVVLGHSYRP DISGSVTSSF 60 GGGGSGIYSA YSPSSAYSSS SSGSRAGQKR SQEATSLVAP SNTTISTITT VPAFTTTTTT 120 TTTTTTTTTT TTTTTTTTTT TAAAGGSTEE TGGERRRRYR GVRQRPWGKW AAEIRDPHKA 180 ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENVSR LLPQLQASQP TTRLAISSSS 240 TSASSQLPFM APISQPTALF QPHHHHHQPI QSSDMIRDYW EYSQLLQNPG DFFDQQQPSG 300 LLEQMFFASS RAILHSNTSS SLSNSAASSP SYPLLFSGQQ SSYYRPQTNQ IQGGGSSSSS 360 SSNISASFWS SSSHYPPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-24 | 157 | 218 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | ERRRRY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792227.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
Refseq | XP_016507834.1 | 1e-140 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
TrEMBL | A0A1S4D3I2 | 1e-138 | A0A1S4D3I2_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
TrEMBL | A0A1U7XJI9 | 1e-138 | A0A1U7XJI9_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | XP_009792227.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 3e-16 | ERF family protein |