PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg15010g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 380aa    MW: 40941.8 Da    PI: 9.6678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg15010g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20158207255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Niben101Ctg15010g00002.1 158 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 207
                               7********.**********7.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-22158216IPR016177DNA-binding domain
PROSITE profilePS5103225.712158215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-33158216IPR001471AP2/ERF domain
PfamPF008473.2E-14158207IPR001471AP2/ERF domain
SMARTSM003805.1E-38158221IPR001471AP2/ERF domain
PRINTSPR003679.7E-12159170IPR001471AP2/ERF domain
CDDcd000181.84E-15166217No hitNo description
PRINTSPR003679.7E-12181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIQQQIHQEA DYLLSTSSTM PMFTGYSQTR EMSTMVTALT HVVLGHSYRP DISGSVTSSF  60
GGGGSGIYSA YSPSSAYSSS SSGSRAGQKR SQEATSLVAP SNTTISTITT VPAFTTTTTT  120
TTTTTTTTTT TTTTTTTTTT TAAAGGSTEE TGGERRRRYR GVRQRPWGKW AAEIRDPHKA  180
ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENVSR LLPQLQASQP TTRLAISSSS  240
TSASSQLPFM APISQPTALF QPHHHHHQPI QSSDMIRDYW EYSQLLQNPG DFFDQQQPSG  300
LLEQMFFASS RAILHSNTSS SLSNSAASSP SYPLLFSGQQ SSYYRPQTNQ IQGGGSSSSS  360
SSNISASFWS SSSHYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-24157218163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792227.11e-140PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
RefseqXP_016507834.11e-140PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1S4D3I21e-138A0A1S4D3I2_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1U7XJI91e-138A0A1U7XJI9_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009792227.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-16ERF family protein