PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Ctg04754g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12501.7 Da PI: 10.8384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.8e-07 | 70 | 98 | 3 | 31 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartm 31 +W++ E++ l +v+++G+g+W+ I +t Niben101Ctg04754g00003.1 70 KWSALEEDTLRTGVQKYGSGNWTHILNTY 98 8************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.54E-9 | 65 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 69 | 97 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.11E-9 | 70 | 108 | No hit | No description |
Pfam | PF00249 | 7.8E-6 | 70 | 96 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
MVKGKLMAAL CLLMVKTLIC VQRDDSADEL NEGSRSSMRR FSLPSPKRMK ISPLKKYEFK 60 KFTTRRKPTK WSALEEDTLR TGVQKYGSGN WTHILNTYRD IFVVRTAV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772851.1 | 2e-49 | PREDICTED: uncharacterized protein LOC104223173 | ||||
Refseq | XP_016477615.1 | 2e-49 | PREDICTED: uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1S4ALX6 | 5e-48 | A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057 | ||||
TrEMBL | A0A1U7W6M4 | 5e-48 | A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173 | ||||
STRING | XP_009772851.1 | 9e-49 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3774 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-09 | TRF-like 5 |