PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg04506g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 121aa MW: 13839.1 Da PI: 10.5638

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg04506g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.4e-16	2	46	9	56
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +g+++AeIrd + ng r++lg+f+t eeAa a+++a+ +++g+ Niben101Ctg04506g00002.1 2 RP-WGKYAAEIRDSTRNG--IRVWLGTFDTVEEAALAYDQAAFSMRGP 46 56.********44465..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.48E-24	1	53	No hit	No description
PROSITE profile	PS51032	19.085	1	53	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.7E-25	1	54	IPR001471	AP2/ERF domain
SMART	SM00380	6.8E-27	1	59	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-10	2	45	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-19	2	55	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
KRPWGKYAAE IRDSTRNGIR VWLGTFDTVE EAALAYDQAA FSMRGPLAFL NFPMEKVKES 60 LQNINMNSIQ LLDGLSPAAA LKETHKMRMK NVKRRRNRKK KKAVLVFEDL GADLLEELLM 120 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-26	1	55	20	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799481.1	9e-83	PREDICTED: ethylene-responsive transcription factor 1B-like
Refseq	XP_016515494.1	4e-81	PREDICTED: uncharacterized protein LOC107832195
Swissprot	A0A3Q7I5Y9	8e-47	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A1S4DQT7	8e-80	A0A1S4DQT7_TOBAC; uncharacterized protein LOC107832195
TrEMBL	A0A1U7YC10	2e-81	A0A1U7YC10_NICSY; ethylene-responsive transcription factor 1B-like
STRING	XP_009799481.1	4e-82	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31230.1	1e-37	ethylene-responsive element binding factor 15

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]