PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg03622g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 104aa MW: 11576.5 Da PI: 8.5195 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 22.3 | 3.1e-07 | 2 | 23 | 36 | 57 |
ZF-HD_dimer 36 gtaaalkCaACgCHRnFHRrev 57 gt+ + Ca CgC R+FHR ++ Niben101Ctg03622g00002.1 2 GTKGSYICANCGCIRSFHRMNN 23 6778999************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.2E-5 | 2 | 23 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
DGTKGSYICA NCGCIRSFHR MNNQPLHRHQ AIRLCFFHHC VIPNGIQPIF HPFMATAGKT 60 QVSVFTAFLP DEMGPVPVPL PLFRETSSSG TFGILKGKQN MDME |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A314LBP5 | 3e-39 | A0A314LBP5_NICAT; Mini zinc finger protein 4 | ||||
STRING | PGSC0003DMT400086860 | 3e-12 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13748 | 6 | 15 |