PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg00317g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 113aa MW: 12555.2 Da PI: 4.4304 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.4 | 1e-13 | 3 | 49 | 50 | 96 |
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 p ++reda+ s+vyeA ar+rdP yG+vg+i++lq+++ +l++el++ Niben101Ctg00317g00003.1 3 PVDNREDAVISMVYEATARLRDPAYGCVGIISALQKHVFHLQSELNE 49 6789****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.476 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-13 | 2 | 49 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
EIPVDNREDA VISMVYEATA RLRDPAYGCV GIISALQKHV FHLQSELNEA LGSPFTPENH 60 AFLHFQKPSE QNAYADASDT LLLLPEAAGN HCPQDNQVLL PLQYWPFIQL AAI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009631247.2 | 9e-55 | PREDICTED: LOB domain-containing protein 4-like | ||||
TrEMBL | A0A1S4CR38 | 1e-51 | A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2 | ||||
TrEMBL | A0A1S4CRC5 | 1e-51 | A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1 | ||||
STRING | XP_009631247.1 | 4e-45 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-15 | LOB domain-containing protein 25 |