PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g479350.1
Common NameMTR_8g479350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 344aa    MW: 37213.9 Da    PI: 8.5666
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g479350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-3964123261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ 
  Medtr8g479350.1  64 NQQHLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSI 123
                      67899****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2663121IPR003851Zinc finger, Dof-type
PfamPF027014.2E-3366122IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.51668122IPR003851Zinc finger, Dof-type
PROSITE patternPS01361070106IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MIQELFGNGA SATLTSSERN YSSINGGVLL QPTTQPPSSC PSSTTTTTTA PTTVTTTTTT  60
SSENQQHLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN  120
KSIGASNNAA KIATNKMKTV SSSEFIGRST SGQGFDLEHV VPPQSQILWG SPQNSHILSL  180
LRSSQNQNPN PNHVKEEGNN FIGSHVSHMM SSQPLISSNG YDGVGHVLCN PFWRNNHDNQ  240
TQQLQNGGFV LGDQQHQHHQ NSGIQELYQK LRSSTTFPSN SVGDISSSPT VLLGNAASNS  300
SSISNILETT SVTGGELGYW NPIPTLTWSD LPTTNGAIQT QYQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.157480.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g479350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446470.10.0dof zinc finger protein DOF2.4
TrEMBLA0A072TSV20.0A0A072TSV2_MEDTR; Dof domain zinc finger protein
STRINGXP_004509179.11e-127(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.11e-33Dof family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]