PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g467340.1
Common NameMTR_8g467340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 392aa    MW: 42465.9 Da    PI: 9.1049
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g467340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.22e-3361118359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                       v YkeClkNhAaslGgha+DGCgEfmp ++ + +++++lkCaACgCHRnFHRre++e
  Medtr8g467340.1  61 VVSYKECLKNHAASLGGHALDGCGEFMPPSSLNpNDPRSLKCAACGCHRNFHRREPQE 118
                      689*************************9999999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2262118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2862116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3164115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.78664115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.73E-18258329IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28258332IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-26271328IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDITSRNIDA DSQIQPNITL KSSPFTNGTH KRQVTATTTT NTTTPPPPPP PQQQPPSSSM  60
VVSYKECLKN HAASLGGHAL DGCGEFMPPS SLNPNDPRSL KCAACGCHRN FHRREPQEHI  120
LTTTTSTTAT ATASAKNSPP FLNCIYTTPS TTVPPPQPPP PLPLPHRGPI SQSTSPSQST  180
SPSHSPSPIS SPSSPPPLSH LPPSYHHSSA PHMLLALGGN AYSTPPQHSD HDQHHHHHQN  240
HLQRNLNFAS SVVKLESHNN NNSHNNTSSG KKRYRTKFSK EQKEKMHGFS EKLGWKMQKS  300
DDGLVQKFCN EIGVSRGVFK VWMHNNKNNS LRKKSESDVG IGIATQIATQ NDDKNNVGNG  360
NDDASNNVIH HMNEDHGCVN VHVSSVNGLS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212723291875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g467340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445699.10.0zinc-finger homeodomain protein 9
TrEMBLA0A072U1Q40.0A0A072U1Q4_MEDTR; Homeobox domain, ZF-HD class protein
STRINGXP_004509968.11e-120(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-27homeobox protein 30
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]