PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g466760.1 | ||||||||
Common Name | MTR_048s1017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 32640.1 Da PI: 8.4588 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Medtr8g466760.1 100 FSCSFCKRQFSTSQALGGHQNAH 122 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 96 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.83E-6 | 97 | 128 | No hit | No description |
PROSITE profile | PS50157 | 11.739 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MASESSSISS TSRDRGDSTH SKKVTNMKEI EQIQSSNSKP DKPIDFMKLS KEDSVPVSKV 60 KEHNFFGPIR IGSSSCFPTD NNQGKDENIN EEKNSDSRSF SCSFCKRQFS TSQALGGHQN 120 AHKAERTLEK QRKQRYDDGV LGLGQSYFNS TLFRPYDYRS IGIRTESMIQ KPHYFSPKIT 180 PHSFGYSHSA LLQDILNPSL VSLRNMGGSN RGFGNLGIGG ATTSRIEDGT NNNKIGAILK 240 LGDSSTNIAT SSNSNMEKQI IVLPTSPKDG IHDLSKSNNE EEPSDSGSSE LDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g466760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445667.1 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | A0A072TS55 | 0.0 | A0A072TS55_MEDTR; Zinc finger-like protein | ||||
STRING | AES83746 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g466760.1 |