PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g461480.1
Common NameMTR_8g461480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family STAT
Protein Properties Length: 712aa    MW: 80154.6 Da    PI: 5.5115
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g461480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT183.42.9e-572233441122
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                      ldvvl++a+gqpv+ + ev asL+yad+g++ve++ d+eapLL sydG+efss +rp+k+l Grasfkl+isqLsskcd rLf i+f++pkl +
  Medtr8g461480.1 223 LDVVLSDAFGQPVDMENEVFASLVYADTGAPVENTTDDEAPLLSSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDSRLFLIRFCVPKLGD 316
                      8********************************************************************************************* PP

             STAT  95 ypfleavskpirCisrsrntrsssltkk 122
                      ypfl++ ++pirCisrsrnt+ s+l++k
  Medtr8g461480.1 317 YPFLQTNTRPIRCISRSRNTKLSTLVWK 344
                      *********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498995.23E-623143IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555504.83E-8611680IPR000980SH2 domain
Gene3DG3DSA:3.30.505.106.4E-6613669IPR000980SH2 domain
PROSITE profilePS500019.529618675IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MGNDEIRRRN KGYCELKDLC LDFDEYDGTF SFCFWIYLIK STTFPATILH QIHSDISESA  60
PFLVINDNKR INVLPVLYLH EEAPVTCMGP WTEVPHVTVD FEFPLEKWVH VGCEVCPNYI  120
RLHINGEIVG EKSLSSLLHK ESNSSNLKEI HLANLCGDSS DVQGYVHNYE GFHTFSSIKD  180
HHLKDPPLKL SIDESSISEV EEESDGVWGI VGGKASCRRN VSLDVVLSDA FGQPVDMENE  240
VFASLVYADT GAPVENTTDD EAPLLSSYDG IEFSSCERPS KFLLGRASFK LRISQLSSKC  300
DSRLFLIRFC VPKLGDYPFL QTNTRPIRCI SRSRNTKLST LVWKKSTYAL ERLNLSQSSA  360
IDDVSLESMN SGHEEKTNPL MKRFRVGLDK ISVSVKANPT LKQSGVECSN SHVWTANQVE  420
KGFPKSLDGR SLNFEEADVS PSESSESTGE RYSPSNSLES RRYQISDMTI FKYCLAGLAE  480
RSQMLKEIAI SASDREISEL AHSVSHFSGC SHHGNQILIS KRLIEDGTNL WLAMSPNNHP  540
IPWKSAVYEV EEQFMKIASC GSRSLSQQDI EILRSIAGCQ EYLSLENFEK LWCWLYPVAC  600
VISRDWVNAI WNSMSPKWIE GFITKEEAEA SLQGPGGFQE RGTFILRFPT SRSWPHPDAG  660
CLIVTYVGND YKLRHKLLSM DHIYGSDNQR IDAKPLQDML LAEPELSRLG R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g461480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-46AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445477.20.0SH2 domain-containing protein A
TrEMBLA0A072TRN90.0A0A072TRN9_MEDTR; SH2 domain protein
TrEMBLA0A396GKW50.0A0A396GKW5_MEDTR; Putative transcription factor STAT family
STRINGXP_004513787.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]