PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g446930.2
Common NameMTR_8g446930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 363aa    MW: 39377 Da    PI: 7.3624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g446930.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.7e-114469126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+ff++t  Ck+G +CkF+H+
  Medtr8g446930.2 44 PGEPDCPFFLKTQKCKFGTKCKFNHP 69
                     5789*********************8 PP
2zf-CCCH38.71.6e-1286111227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG CkyG+ CkF+H++
  Medtr8g446930.2  86 QEPPCAFYLKTGKCKYGAACKFHHPK 111
                      689*********************96 PP
3zf-CCCH39.87.6e-13164188226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C+f+++tG Ck+G++C+++H+
  Medtr8g446930.2 164 REVDCPFYMKTGSCKFGASCRYNHP 188
                      6899********************9 PP
4zf-CCCH38.22.4e-12251274326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + +C+f++++G+Ck+G+rCk++H+
  Medtr8g446930.2 251 QIECDFYMKSGICKFGERCKYHHP 274
                      568********************8 PP
5zf-CCCH37.73.5e-12300325227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + e+C+++++t tCk+G++CkF H+p
  Medtr8g446930.2 300 GVEICPYYLKTATCKFGATCKFDHPP 325
                      679*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3994371IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-44370IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-54869IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90184112IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1086111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-686112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-689110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403162190IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-8162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5163189IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10164188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4168187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112248276IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6248275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6250277IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10252274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953298326IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5298325IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5302323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MLSPPPLPPS PLLQQMSPLP LHLILNALLM VPNIVPSETL PERPGEPDCP FFLKTQKCKF  60
GTKCKFNHPN VPSENDDVSG LPERPQEPPC AFYLKTGKCK YGAACKFHHP KDIQIQLSDD  120
LSRTVEQTQT NSSVFDGAIG DTQSIMPLIS PLSHNSKGLP VRPREVDCPF YMKTGSCKFG  180
ASCRYNHPDM NAINPPVSAL GPSVLASSTA NLNMGAINPA ASFYQAFDPS LSNPMSQVGV  240
TGTIYPQRPG QIECDFYMKS GICKFGERCK YHHPIDRTTS LSKLQSNVKL TAAGLPRREG  300
VEICPYYLKT ATCKFGATCK FDHPPPGEVM EMAKSQGAST TNGGETETNE DVPVPGSAPE  360
QY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87370.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g446930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445292.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-121C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A072TP910.0A0A072TP91_MEDTR; Zinc finger CCCH domain protein
STRINGXP_004517027.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-123floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]