PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g446930.1
Common NameMTR_8g446930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 513aa    MW: 55453.5 Da    PI: 7.5542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g446930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-10143167226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C +++ t tCk+G++CkF H+
  Medtr8g446930.1 143 GEKDCAHYMLTRTCKFGESCKFDHP 167
                      7889********************8 PP
2zf-CCCH32.81.2e-10194219126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+ff++t  Ck+G +CkF+H+
  Medtr8g446930.1 194 PGEPDCPFFLKTQKCKFGTKCKFNHP 219
                      5789*********************8 PP
3zf-CCCH38.22.5e-12236261227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++C f+++tG CkyG+ CkF+H++
  Medtr8g446930.1 236 QEPPCAFYLKTGKCKYGAACKFHHPK 261
                      689*********************96 PP
4zf-CCCH39.21.2e-12314338226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C+f+++tG Ck+G++C+++H+
  Medtr8g446930.1 314 REVDCPFYMKTGSCKFGASCRYNHP 338
                      6899********************9 PP
5zf-CCCH37.63.6e-12401424326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + +C+f++++G+Ck+G+rCk++H+
  Medtr8g446930.1 401 QIECDFYMKSGICKFGERCKYHHP 424
                      568********************8 PP
6zf-CCCH37.15.4e-12450475227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + e+C+++++t tCk+G++CkF H+p
  Medtr8g446930.1 450 GVEICPYYLKTATCKFGATCKFDHPP 475
                      679*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0034141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5142168IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8143167IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4193220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399193221IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-8195219IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.901234262IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10236261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6236262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5239260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403312340IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-8312339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5313339IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10314338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4318337IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6398425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112398426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6400427IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9402424IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4404424IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953448476IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5448475IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9450475IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5451475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5452473IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDNRIYTSSY NIPTGAAPST ASPDPNTMFL AHYRRTAEAA AAASSIRYSS DFDIAPPGVA  60
SRISTTNPWA NAFPSAAAAV AAAATNVASA ASLDLKRSSD ALYHPSILST IGQNEAWYTS  120
NSLAKRPRYE TGSTLPIYPQ RPGEKDCAHY MLTRTCKFGE SCKFDHPIWV PAGGIPDWKE  180
VPNIVPSETL PERPGEPDCP FFLKTQKCKF GTKCKFNHPN VPSENDDVSG LPERPQEPPC  240
AFYLKTGKCK YGAACKFHHP KDIQIQLSDD LSRTVEQTQT NSSVFDGAIG DTQSIMPLIS  300
PLSHNSKGLP VRPREVDCPF YMKTGSCKFG ASCRYNHPDM NAINPPVSAL GPSVLASSTA  360
NLNMGAINPA ASFYQAFDPS LSNPMSQVGV TGTIYPQRPG QIECDFYMKS GICKFGERCK  420
YHHPIDRTTS LSKLQSNVKL TAAGLPRREG VEICPYYLKT ATCKFGATCK FDHPPPGEVM  480
EMAKSQGAST TNGGETETNE DVPVPGSAPE QY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87370.0flower| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g446930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445292.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-174C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A072TR500.0A0A072TR50_MEDTR; Putative transcription factor C3H family
STRINGXP_004517027.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-174floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]