PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g445680.1 | ||||||||
Common Name | MTR_8g445680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19912 Da PI: 5.3383 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.2 | 9.7e-13 | 11 | 78 | 2 | 69 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 C C+ ++r+C++dC + + f +++++f+ + + G sn++++++++++ +r+ a++s++ +++ ++ Medtr8g445680.1 11 CLLCQCHNRHCNNDCEYGEFFKPHRNEDFQSALRSLGLSNIMSMMESVETYDRQGAANSILSQGRDWQ 78 999*********************************************************98887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.146 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-11 | 11 | 80 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNEGNKHARV CLLCQCHNRH CNNDCEYGEF FKPHRNEDFQ SALRSLGLSN IMSMMESVET 60 YDRQGAANSI LSQGRDWQRR QYGRQLEMGE EISSFKRKAL FASTFMTFCR YYAKSVPFPI 120 TSRSYKMNGI LTASESGESS NASKGKQVLI EQSDSEDNDD MEDLSPNENA RSEE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g445680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072TPV3 | 1e-128 | A0A072TPV3_MEDTR; DUF260 family protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36000.1 | 2e-10 | LOB domain-containing protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g445680.1 |
Entrez Gene | 25502384 |
Publications ? help Back to Top | |||
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