PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g105780.2
Common NameMTR_8g105780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 372aa    MW: 42183.3 Da    PI: 4.8675
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g105780.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36231152102
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k y+++ed++++++isws +++nsf++++ ++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+k+ll
  Medtr8g105780.2  23 FLNKCYDMVEDPSTDSIISWSaDSNNSFIISNADQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADH---------WEFANENFIRGQKHLL 107
                      9********************8889*****************************************999.........**************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  95 ekikrkks 102
                      ++i+r+k+
  Medtr8g105780.2 108 KNIRRRKH 115
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-5519113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-3619113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-3319113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-192346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3123113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVKAATSSEK GGSGSGSGSV APFLNKCYDM VEDPSTDSII SWSADSNNSF IISNADQFSL  60
TLLPNYFKHN NFSSFVRQLN IYGFRKIDAD HWEFANENFI RGQKHLLKNI RRRKHPHVAA  120
DQQKPLPPKD NRDEPSQEAV NHGLWREVEN LKSDRKTLTQ ELVKHKQHLE SSESKLLLLS  180
DRLEGMEKHQ QQMLSFLVMV VQCPGFLVQL LHPKENNWRF SEAGNMWDQG NQDDRPVSSD  240
GMIIKYTPPV AEKLKPVVPR SPAFNKQPEP EVSTDGLKDL CISSEFLKLL LDEKLCPLDN  300
HSPFLVPDLP DDGSWEQLFL GSPILKNVED TDRENEEQTV SDTEMDHIIS EALNETSDFE  360
AMIIEMENTH A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2511137129Heat shock factor protein 1
5d5v_B2e-2511137129Heat shock factor protein 1
5d5v_D2e-2511137129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.103060.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g105780.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1533500.0AC153350.18 Medicago truncatula clone mth2-77l10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629287.10.0heat stress transcription factor A-8
TrEMBLG7LBG80.0G7LBG8_MEDTR; Heat shock transcription factor
STRINGAET054550.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.19e-80heat shock transcription factor A8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]