PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g104190.1
Common NameMTR_8g104190
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 417aa    MW: 47041.4 Da    PI: 4.8506
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g104190.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.3e-071962340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + ++++fC  ++ +lC+ C    H+       H++v
  Medtr8g104190.1 19 ARACDSCLRRRARWFCAADDAFLCHGCDNLVHSAnllasrHERV 62
                     578*****************************667888888876 PP
2CCT66.48.2e-23358401144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Medtr8g104190.1 358 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 401
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1681764IPR000315B-box-type zinc finger
SMARTSM003361.1E-81764IPR000315B-box-type zinc finger
PfamPF006432.6E-61962IPR000315B-box-type zinc finger
CDDcd000211.79E-82064No hitNo description
PfamPF062039.5E-18358400IPR010402CCT domain
PROSITE profilePS5101715.993358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010223Biological Processsecondary shoot formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MIIDMKGDAD AGALGAKTAR ACDSCLRRRA RWFCAADDAF LCHGCDNLVH SANLLASRHE  60
RVRLQTASAK VTTTAQAWHS GFTRKARTPR HNKNSSIQQQ QQRLKEKVLF NTSFLPLVPE  120
LGGEEEQGQE LLVDIDEADE EQLLCRVPVF DANPFDLETC TVKNDAVDFE EMCDLDSFCE  180
FDVDLAEFAA NVESLLGVGS SEIQENSSGQ VFDYKQENEM DASKSEMLKV KDEELDDLES  240
VFDMTSDDVF HWNIDNNDVS LAQQEKEYMP LSNSSVGYSE SVITKEETKR ERFLRLNYEE  300
VITEWSRQGS PSPWTTANPP KFNCDDDSWQ NLLGSSGVEG EVRSLRGQLM GSGGDGGREA  360
RVSRYREKRR TRLFAKKIRY EVRKLNAEKR PRMKGRFVKR TACFAGGATS FPTNYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368384RRTRLFAKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.19380.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g104190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1373110.0BT137311.1 Medicago truncatula clone JCVI-FLMt-21J5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630849.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLG7L9P20.0G7L9P2_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAET053250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-76B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]