PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g103320.1
Common NameMTR_8g103320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 479aa    MW: 51756.4 Da    PI: 7.8642
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g103320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.1e-1581119241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ +
  Medtr8g103320.1  81 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCFNNVD 119
                      89**************************.********986 PP
2TCR51.32.3e-16165204140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Medtr8g103320.1 165 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 204
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-1780120IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.68381205IPR005172CRC domain
PfamPF036382.2E-1182117IPR005172CRC domain
SMARTSM011148.4E-20165206IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.7E-13168203IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MGEGEGSDIP PKNAPLDSVK KLARQLDFNA FGGTPVTAPL PEHPQPSPTL PPLPATKLGK  60
PESPKSKSRP NFETKDATPK KQKQCNCKHS RCLKLYCECF ASGIYCDGCN CVNCFNNVDN  120
EAARREAVEA TLERNPNAFR PKIASSPHGT RDNKEETGEV KVLVKHNKGC HCKKSGCLKK  180
YCECFQANIL CSENCKCMDC KNFEGSEERQ ALFHGDQNNN MAYLQQAANA AITGAIGSSG  240
YSSPPVARKR KGSELWPSIR DPSFGKLGQQ ANPVRGPAAP SSSLSPVPVP RVGPSTLGPS  300
KFMYRSLLAD IIQPQHLKEL CSVLVLVSGQ ATKTLTDQKN LIDKHTDDQT ETSLASSNQE  360
QLPNQKEADV EKAVADDCSS ANQTDKTSPE NSSSDGADVP KGRPMSPGTL ALMCDEQDTM  420
FMTAAPSTVS MAHACNTSSQ LPYGQGAKEI YAEQERIVLT KFRDFLNRVI TMGEINGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-31732142132Protein lin-54 homolog
5fd3_B2e-31732142132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g103320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-120AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630778.30.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLG7L8860.0G7L886_MEDTR; Tesmin/TSO1-like CXC domain protein
STRINGXP_004503448.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-167Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]