PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g100130.1
Common NameMTR_8g100130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 362aa    MW: 40525.4 Da    PI: 5.1346
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g100130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.74.7e-2147140185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rWt+qe+l+Liea++ +e+  +  +         +  p+W+ vs+ ++++g++r+++qC+++w nl ++++kik++e++ ++es+s + + +++
  Medtr8g100130.1  47 RWTRQETLVLIEAKKVIENGDQVCRyrsstsglvQTDPKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDFRKIKKWESNIKDESESFWIMRNDV 140
                      8**************9988777432334467788*********************************************999999888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1146136No hitNo description
Gene3DG3DSA:1.10.10.602.0E-547114IPR009057Homeodomain-like
PROSITE profilePS500906.65547113IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSEMCEPNSE KASEISAESP TTPVGAQPVE TAEPKSSERV KATRHPRWTR QETLVLIEAK  60
KVIENGDQVC RYRSSTSGLV QTDPKWDLVS SLCQQHGVKR GAVQCRKRWG NLLTDFRKIK  120
KWESNIKDES ESFWIMRNDV RKENKLPGFF DSVVYNVLDG GVCTAAAFPL TLIKMMPRAE  180
NGDQVEGVPA LEQCNKEDEN EEDEDEAIVD SDKMEWSTEE ENNETNIMVN SPFKAPNAKK  240
SNIVGGLKVT PPPPITLPGS AERPPHPFFQ GNYDPGCQRE ALFNEGYKRK RLSSDNSEDT  300
ADFNEDVIKV LRRNSNILKT HLGAQNMNSQ LARDQQKQQN DSLVAALGRL TDAITKIADK  360
M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g100130.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267940.0AC126794.15 Medicago truncatula chromosome 4 clone mth2-24j7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630592.10.0trihelix transcription factor ASR3
TrEMBLG7LIU00.0G7LIU0_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAET050680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-51Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]