PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g099780.1
Common NameMTR_8g099780
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family BBR-BPC
Protein Properties Length: 313aa    MW: 35348.9 Da    PI: 9.7622
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g099780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind334.62.7e-10213121301
        GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkal 74 
                      mddd ++e  r+k  yy+               ++++l   +++++ s++aer+a++   e ++a+sek++a+a+rd+a+ qrd+ala+r++al
  Medtr8g099780.1   1 MDDDRQYEngRHKMdYYRgahslwnvdpqhqikEQNALV--MNKKIRSIMAERQAALleLELEAAISEKNEALAARDVALRQRDEALAQRDNAL 92 
                      899988888999998999********9766553224555..999************977677889***************************** PP

        GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
                      +erdn+l+al+ ++ +   + p++ ++ +g+k ++++ + + +++++ a+ +++  + +a p++  ++e  +++ +k  ++++++ +++ +k k
  Medtr8g099780.1  93 LERDNALAALQSRNST--ANFPFNGGIQRGSKRMHHSSN-HISNMTEAAYSTTDIIIRDASPVTVITSEDVKSHLTK--RTKENKASQTPTKIK 181
                      ***********97765..7789999**********8887.679*******************998877777777666..445555566778999 PP

        GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
                      k +e+ ++k  +e+  ++ k+e++ +d++ln +++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S++PLP+ +++r+aRi+grKmS+
  Medtr8g099780.1 182 KMGEDLNRKAYSEG--TKIKSEWDRQDVGLNSIAFDETVMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMHPLPQLPNKRHARIGGRKMSG 273
                      99999999988888..57**************************************************************************** PP

        GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      ++f++lL++ a+eG+dls p+DLkd+WA+HGtn+++ti+
  Medtr8g099780.1 274 NVFRRLLSRFASEGHDLSIPLDLKDYWARHGTNRYITIK 312
                      **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.1E-1381312IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-951312IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDDRQYENG RHKMDYYRGA HSLWNVDPQH QIKEQNALVM NKKIRSIMAE RQAALLELEL  60
EAAISEKNEA LAARDVALRQ RDEALAQRDN ALLERDNALA ALQSRNSTAN FPFNGGIQRG  120
SKRMHHSSNH ISNMTEAAYS TTDIIIRDAS PVTVITSEDV KSHLTKRTKE NKASQTPTKI  180
KKMGEDLNRK AYSEGTKIKS EWDRQDVGLN SIAFDETVMP VPVCTCTGVP RQCYKWGNGG  240
WQSSCCTTTL SMHPLPQLPN KRHARIGGRK MSGNVFRRLL SRFASEGHDL SIPLDLKDYW  300
ARHGTNRYIT IK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g099780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630555.20.0protein BASIC PENTACYSTEINE4
RefseqXP_024627517.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C61e-126BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLG7LI340.0G7LI34_MEDTR; GAGA-binding transcriptional activator BBR/BPC6-like protein
STRINGAET050310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-125basic pentacysteine 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]