PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g099215.1 | ||||||||
Common Name | MTR_8g099215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 35318.6 Da PI: 5.0084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.5e-18 | 105 | 156 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+W+AeIrdp+ + r +lg++ taeeAa +++a+ +++g+ Medtr8g099215.1 105 KKYRGVRQRP-WGKWAAEIRDPKL---KFRRWLGTYNTAEEAAMEYDKAAIEIRGA 156 59********.**********933...3555**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.14E-32 | 105 | 162 | No hit | No description |
Pfam | PF00847 | 3.0E-11 | 106 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 106 | 162 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-28 | 106 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 106 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 106 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-9 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MPKQPSTPPP IPNIIKHTHH FTQINNIMPK TIQIRYTDPD ATDSSSDEEE NPIHSNITPR 60 RRIKTFIHDI VIEKETISNK RKNPNTRVKT KTPATQRRPV IYTGKKYRGV RQRPWGKWAA 120 EIRDPKLKFR RWLGTYNTAE EAAMEYDKAA IEIRGADALT NFIQPTTKKV VINSSSDECV 180 VSATSVLQCC TSSSEGGESV TVKDNVIVPM STESLRECEN ECSSVSGNLF DNDLVKSESV 240 FPIPNDTLFD EFGNMFLFHD DLSGSFVDTS INSLDLGFTE WNRDYGDFQD IGDLFGSDPV 300 TAVLFDEEMS QVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 104 | 162 | 3 | 62 | ATERF1 |
3gcc_A | 5e-22 | 104 | 162 | 3 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g099215.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447158.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A072U5R0 | 0.0 | A0A072U5R0_MEDTR; Ethylene response factor | ||||
STRING | XP_004503833.1 | 5e-89 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 4e-44 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g099215.1 |
Entrez Gene | 25502148 |
Publications ? help Back to Top | |||
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