PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g099215.1
Common NameMTR_8g099215
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 314aa    MW: 35318.6 Da    PI: 5.0084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g099215.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-18105156156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr+++ +g+W+AeIrdp+    + r +lg++ taeeAa  +++a+ +++g+
  Medtr8g099215.1 105 KKYRGVRQRP-WGKWAAEIRDPKL---KFRRWLGTYNTAEEAAMEYDKAAIEIRGA 156
                      59********.**********933...3555**********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-32105162No hitNo description
PfamPF008473.0E-11106155IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-20106162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-28106163IPR001471AP2/ERF domain
PROSITE profilePS5103222.642106163IPR001471AP2/ERF domain
SMARTSM003802.1E-33106169IPR001471AP2/ERF domain
PRINTSPR003673.7E-9107118IPR001471AP2/ERF domain
PRINTSPR003673.7E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPKQPSTPPP IPNIIKHTHH FTQINNIMPK TIQIRYTDPD ATDSSSDEEE NPIHSNITPR  60
RRIKTFIHDI VIEKETISNK RKNPNTRVKT KTPATQRRPV IYTGKKYRGV RQRPWGKWAA  120
EIRDPKLKFR RWLGTYNTAE EAAMEYDKAA IEIRGADALT NFIQPTTKKV VINSSSDECV  180
VSATSVLQCC TSSSEGGESV TVKDNVIVPM STESLRECEN ECSSVSGNLF DNDLVKSESV  240
FPIPNDTLFD EFGNMFLFHD DLSGSFVDTS INSLDLGFTE WNRDYGDFQD IGDLFGSDPV  300
TAVLFDEEMS QVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22104162362ATERF1
3gcc_A5e-22104162362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g099215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447158.10.0ethylene-responsive transcription factor CRF1
TrEMBLA0A072U5R00.0A0A072U5R0_MEDTR; Ethylene response factor
STRINGXP_004503833.15e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-44cytokinin response factor 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]