PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g098945.1
Common NameMTR_8g098945
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 274aa    MW: 31198.3 Da    PI: 6.9362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g098945.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29130187359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs++prsYYrC+s+ gC +kk+ve+++ dpkv  +tY+ eHnh+
  Medtr8g098945.1 130 DAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLAKKQVEKNHLDPKVYLVTYTAEHNHP 187
                      99************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-29114189IPR003657WRKY domain
PROSITE profilePS5081131.812123189IPR003657WRKY domain
SuperFamilySSF1182909.42E-25127189IPR003657WRKY domain
SMARTSM007746.4E-35128188IPR003657WRKY domain
PfamPF031061.6E-24130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDELAFLMDW DLEAINEVPT TNPYFSHLFS EQDHDELLFG SFPEFSKTTN VLIHEFEELC  60
KPNFYPLSSQ TILTSSLATP KEPEQVKEIK AASHQDLQIP AVSKFKKSKK NKNKSNIVKK  120
VTAVDGTLCD AWAWRKYGQK PIKGSPYPRS YYRCSSSKGC LAKKQVEKNH LDPKVYLVTY  180
TAEHNHPQPT RRNSLAGSTR KNNILVTHSS KTPLVKIEDE VNVTSMKQQN KGFEKDDQDL  240
LEWLDGAQLC DDGWIPSKEL EELIGLDNKC QYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-18118190580Disease resistance protein RRS1
5w3x_D3e-18118190580Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242360.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g098945.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447112.10.0probable WRKY transcription factor 29
SwissprotQ9SUS12e-44WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLA0A072TUD20.0A0A072TUD2_MEDTR; Putative transcription factor WRKY family
STRINGXP_007160109.12e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.15e-31WRKY family protein
Publications ? help Back to Top
  1. Zhou F, et al.
    High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression.
    Plant J., 2004. 39(6): p. 920-32
    [PMID:15341634]
  2. Liu XQ, et al.
    OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.
    Cell Res., 2005. 15(8): p. 593-603
    [PMID:16117849]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  5. Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY
    The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition.
    PLoS ONE, 2014. 9(2): p. e88951
    [PMID:24586453]
  6. Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME
    The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components.
    Mol. Plant Pathol., 2015. 16(9): p. 963-72
    [PMID:25727690]
  7. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  8. Li Y,Williams B,Dickman M
    Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29.
    New Phytol., 2017. 214(2): p. 695-705
    [PMID:28032645]
  9. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]