PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g098815.1 | ||||||||
Common Name | MTR_8g098815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 621aa MW: 70151.8 Da PI: 6.7357 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 389 | 426 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Medtr8g098815.1 389 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 426 664459******************************88 PP | |||||||
2 | BELL | 120.9 | 5.5e-39 | 251 | 321 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kLls+leeVd+rYk+y++q++ v+ssFeavag g+ak+Y +lAlka+SrhFrcLkd i eqi Medtr8g098815.1 251 FVELQKRKTKLLSMLEEVDRRYKHYCNQMRSVVSSFEAVAGNGAAKVYSALALKAMSRHFRCLKDGILEQI 321 679*******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.2E-58 | 180 | 319 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-48 | 186 | 317 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 367 | 430 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-9 | 370 | 434 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.15E-11 | 370 | 431 | No hit | No description |
SuperFamily | SSF46689 | 3.76E-17 | 371 | 436 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-28 | 373 | 436 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 387 | 426 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MARQLCHEDD KTSSGGFCYN PTIQTQIQGF VSDPEMFNLT TGMEMIGFSK QHLQQHSTDT 60 TNSVMWKTNF SGKLSQQHVG PSSSSKTMND NFYHHQDFTV SDTTSSDQNL NNMVHHDSSS 120 HHQWQQVDDS SLRCVFPCEG NERPSQGLSL SLSSTNPSSI GLQSFELRHT TNHHLQDQGY 180 QGHFLLKNSK FLLPAQELLN EFCSLESTKQ NDLVLQKQKS QKFNNKQSWE DDNNNGGSSS 240 SIKQSLTSVE FVELQKRKTK LLSMLEEVDR RYKHYCNQMR SVVSSFEAVA GNGAAKVYSA 300 LALKAMSRHF RCLKDGILEQ IQTTRKAMGE KDPVAPGTTK GETPRLKILD RVLRQQRAFQ 360 QINMMETHPW RPQRGLPERS VSILRAWLFE HFLHPYPSDV DKHILARQTG LSRSQVSNWF 420 INARVRLWKP MVEEMYLEEE KEQQRNTTTS DGGNNINHEE DNLNVLQNQS QTQPHEDQKP 480 RLLRIDSECV SSIINNDHKN DANNKNLNHH QLAADAFGSV DIDFSSYNTH HSSSDMVAAY 540 TSGESFHQGG SSGGVSLTLG LQQHGGNGVS LAFPPTSQSP MFYTRDQIEE PVQYSLLDGE 600 GTNIMPYRNL MGTQLLHDLA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 376 | 434 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7013 | 0.0 | glandular trichome| leaf| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g098815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013447087.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-133 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A072TUA6 | 0.0 | A0A072TUA6_MEDTR; BEL1-related homeotic protein | ||||
STRING | XP_004503684.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4650 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-111 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g098815.1 |
Entrez Gene | 25502090 |
Publications ? help Back to Top | |||
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