PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093480.6
Common NameMTR_8g093480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 737aa    MW: 82267.3 Da    PI: 8.316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093480.6genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-0695115526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +Cr+fa  G C++G+ C+F H 
  Medtr8g093480.6  95 PCRDFAV-GNCRRGSHCHFLHH 115
                      8******.*************6 PP
2zf-CCCH185.2e-06153174426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++Ck+ H 
  Medtr8g093480.6 153 EACIYFAK-GRCRMGESCKYVHH 174
                      78******.*************6 PP
3zf-CCCH20.68.1e-07218238526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ffa  G C+ G  C+F+H+
  Medtr8g093480.6 218 PCKFFAL-GNCRNGKDCRFSHD 238
                      8**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.40890117IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-490116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-494116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08149176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5150174IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014150175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432214240IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5214239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6215238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4218239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MRFSRKEPFS GVRGSNKDDE DYQVLDATFA KDTDGSYNMK MSPGFEEWKN REHSQYAKND  60
YGRSRRSRSR SPPHGFSHSS VDDRNRTRDG RSAQPCRDFA VGNCRRGSHC HFLHHDKQSY  120
EDSRESRHRP DGRRYSNPRE NGDYSLTNRR SNEACIYFAK GRCRMGESCK YVHHDNSDGF  180
DKILADESSS EREIDRRHIE QSFKQGDQHY PNHSSNTPCK FFALGNCRNG KDCRFSHDRQ  240
AFTSPGLRDD RSRSNQGEDQ VLNRPKLSNS VAPNGRLRDD RCGSDGRMAD VDKVWDGPMQ  300
TDLVAVSGTV NLVEDNKNGI IGAPEPGLMA WPMNDGSGHS LDRNRMHDES PFSIDKKEAN  360
CRTAENAFDN ILNSQSVGGG MWPGDEQMSP DWNYGPRSSN HIKDEHMQNK QQVAPGQGLN  420
QNAQNITASH LVGQSQATVA IVPPRARIIE GIQNQKLSTE KNYIVESNIM NASQSQISSG  480
YTPTQNGVSK EQLAQLSCLS ASLAHILGTG QQLPQVHSTL KPCDAKATLF GSKIEGSANP  540
VSMTFIKPDP AIGLKQYDPL FDSMEPMNIS ANGAPPTFSP SIKIPKNAVE IPPLLSNIGQ  600
NCDDSLKKET NKMVAEEKPI SQSENNITEE NSPMGDMDQN DGPDEAKKTK DAKGSRAFKS  660
SLVELIKEIL KPTWKDGKIT KEDYKTIVKK VTDKVTGTVQ RVHIPQTREK IERYLSVSKP  720
KVNKLIQAYV EKVQKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248300.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093480.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743080.0AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence.
GenBankAC1870440.0AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630250.10.0zinc finger CCCH domain-containing protein 38 isoform X2
RefseqXP_024628572.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLG7LE040.0G7LE04_MEDTR; Putative transcription factor C3H family
STRINGAET047260.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]