PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g093480.3
Common NameMTR_8g093480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 780aa    MW: 87161.6 Da    PI: 8.5043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g093480.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06138158526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +Cr+fa  G C++G+ C+F H 
  Medtr8g093480.3 138 PCRDFAV-GNCRRGSHCHFLHH 158
                      8******.*************6 PP

2zf-CCCH17.95.5e-06196217426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C +fa+ G C+ G++Ck+ H 
  Medtr8g093480.3 196 EACIYFAK-GRCRMGESCKYVHH 217
                      78******.*************6 PP

3zf-CCCH20.58.6e-07261281526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ffa  G C+ G  C+F+H+
  Medtr8g093480.3 261 PCKFFAL-GNCRNGKDCRFSHD 281
                      8**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.408133160IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4137159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08192219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5193217IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014193218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432257283IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5257282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6258281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4261282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSGGSRKLSS NRDSRDEPEF PPESVTKSNS SRYLERNDTL KPRMRFSRKE PFSGVRGSNK  60
DDEDYQVLDA TFAKDTDGSY NMKMSPGFEE WKNREHSQYA KNDYGRSRRS RSRSPPHGFS  120
HSSVDDRNRT RDGRSAQPCR DFAVGNCRRG SHCHFLHHDK QSYEDSRESR HRPDGRRYSN  180
PRENGDYSLT NRRSNEACIY FAKGRCRMGE SCKYVHHDNS DGFDKILADE SSSEREIDRR  240
HIEQSFKQGD QHYPNHSSNT PCKFFALGNC RNGKDCRFSH DRQAFTSPGL RDDRSRSNQG  300
EDQVLNRPKL SNSVAPNGRL RDDRCGSDGR MADVDKVWDG PMQTDLVAVS GTVNLVEDNK  360
NGIIGAPEPG LMAWPMNDGS GHSLDRNRMH DESPFSIDKK EANCRTAENA FDNILNSQSV  420
GGGMWPGDEQ MSPDWNYGPR SSNHIKDEHM QNKQQVAPGQ GLNQNAQNIT ASHLVGQSQA  480
TVAIVPPRAR IIEGIQNQKL STEKNYIVES NIMNASQSQI SSGYTPTQNG VSKEQLAQLS  540
CLSASLAHIL GTGQQLPQVH STLKPCDAKA TLFGSKIEGS ANPVSMTFIK PDPAIGLKQY  600
DPLFDSMEPM NISANGAPPT FSPSIKIPKN AVEIPPLLSN IGQNCDDSLK KETNKMVAEE  660
KPISQSENNI TEENSPMGDM DQNDGPDEAK KTKDAKGSRA FKSSLVELIK EILKPTWKDG  720
KITKEDYKTI VKKVTDKVTG TVQRVHIPQT REKIERYLSV SKPKVNKLIQ AYVEKVQKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248300.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g093480.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743080.0AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence.
GenBankAC1870440.0AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630250.10.0zinc finger CCCH domain-containing protein 38 isoform X2
RefseqXP_024628572.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLG7LE040.0G7LE04_MEDTR; Putative transcription factor C3H family
STRINGAET047260.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-11C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]