PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g093480.1 | ||||||||
Common Name | MTR_8g093480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 780aa MW: 87161.6 Da PI: 8.5043 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.8 | 2.9e-06 | 138 | 158 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa G C++G+ C+F H Medtr8g093480.1 138 PCRDFAV-GNCRRGSHCHFLHH 158 8******.*************6 PP | |||||||
2 | zf-CCCH | 17.9 | 5.5e-06 | 196 | 217 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++Ck+ H Medtr8g093480.1 196 EACIYFAK-GRCRMGESCKYVHH 217 78******.*************6 PP | |||||||
3 | zf-CCCH | 20.5 | 8.6e-07 | 261 | 281 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa G C+ G C+F+H+ Medtr8g093480.1 261 PCKFFAL-GNCRNGKDCRFSHD 281 8**9999.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.408 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 137 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 193 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 193 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 257 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 258 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 261 | 282 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 780 aa Download sequence Send to blast |
MSGGSRKLSS NRDSRDEPEF PPESVTKSNS SRYLERNDTL KPRMRFSRKE PFSGVRGSNK 60 DDEDYQVLDA TFAKDTDGSY NMKMSPGFEE WKNREHSQYA KNDYGRSRRS RSRSPPHGFS 120 HSSVDDRNRT RDGRSAQPCR DFAVGNCRRG SHCHFLHHDK QSYEDSRESR HRPDGRRYSN 180 PRENGDYSLT NRRSNEACIY FAKGRCRMGE SCKYVHHDNS DGFDKILADE SSSEREIDRR 240 HIEQSFKQGD QHYPNHSSNT PCKFFALGNC RNGKDCRFSH DRQAFTSPGL RDDRSRSNQG 300 EDQVLNRPKL SNSVAPNGRL RDDRCGSDGR MADVDKVWDG PMQTDLVAVS GTVNLVEDNK 360 NGIIGAPEPG LMAWPMNDGS GHSLDRNRMH DESPFSIDKK EANCRTAENA FDNILNSQSV 420 GGGMWPGDEQ MSPDWNYGPR SSNHIKDEHM QNKQQVAPGQ GLNQNAQNIT ASHLVGQSQA 480 TVAIVPPRAR IIEGIQNQKL STEKNYIVES NIMNASQSQI SSGYTPTQNG VSKEQLAQLS 540 CLSASLAHIL GTGQQLPQVH STLKPCDAKA TLFGSKIEGS ANPVSMTFIK PDPAIGLKQY 600 DPLFDSMEPM NISANGAPPT FSPSIKIPKN AVEIPPLLSN IGQNCDDSLK KETNKMVAEE 660 KPISQSENNI TEENSPMGDM DQNDGPDEAK KTKDAKGSRA FKSSLVELIK EILKPTWKDG 720 KITKEDYKTI VKKVTDKVTG TVQRVHIPQT REKIERYLSV SKPKVNKLIQ AYVEKVQKA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24830 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g093480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174308 | 0.0 | AC174308.7 Medicago truncatula clone mth2-139i23, complete sequence. | |||
GenBank | AC187044 | 0.0 | AC187044.4 Medicago truncatula clone mth2-135j6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003630250.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X2 | ||||
Refseq | XP_024628572.1 | 0.0 | zinc finger CCCH domain-containing protein 38 isoform X2 | ||||
TrEMBL | G7LE04 | 0.0 | G7LE04_MEDTR; Putative transcription factor C3H family | ||||
STRING | AET04726 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g093480.1 |
Entrez Gene | 11438536 |
Publications ? help Back to Top | |||
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