PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g092460.1
Common NameMTR_8g092460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 314aa    MW: 34544.8 Da    PI: 7.7208
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g092460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-20144193255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae+Aaka+++a ++++g
  Medtr8g092460.1 144 KYRGVRQRP-WGKWAAEIRDpF-----KaTRVWLGTFETAEDAAKAYDQASLRFRG 193
                      8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32143202IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22144202IPR016177DNA-binding domain
PROSITE profilePS5103224.79144201IPR001471AP2/ERF domain
CDDcd000184.65E-34144203No hitNo description
PfamPF008471.9E-13144193IPR001471AP2/ERF domain
SMARTSM003802.4E-36144207IPR001471AP2/ERF domain
PRINTSPR003676.2E-12145156IPR001471AP2/ERF domain
PRINTSPR003676.2E-12167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPLPMMFPGL NREGEMSAMV SALTHVICGD QNNDGGSDGY NVLNQNMNHN AFEGDGIDIK  60
PFGSSSTSLS YGGNSALKRR REDGGFFDNS SSPIPQIKHQ GVECSSNWTN TVTTTTGRSQ  120
VEEQIYEYRT DNNNVKNEDQ PKRKYRGVRQ RPWGKWAAEI RDPFKATRVW LGTFETAEDA  180
AKAYDQASLR FRGNKAKLNF PENVKLKQQQ STPTHLNISH SNSALLSHQP RTDPDPIVHN  240
ETLHTLQSSN KYYDYFNGQN FPMASLQTSV SPSASYSSSY TTTTFASSFS SPQTTSSIPS  300
GLTAWPSGSS PSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-25143204163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.223731e-59root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g092460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375220.0AC137522.12 Medicago truncatula clone mth2-9h8, complete sequence.
GenBankAC1742930.0AC174293.6 Medicago truncatula clone mth2-70h5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630161.10.0ethylene-responsive transcription factor ABR1
TrEMBLG7LC780.0G7LC78_MEDTR; DNA-binding domain protein
STRINGAET046370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-34related to AP2 6l
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]