PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g090350.1 | ||||||||
Common Name | MTR_8g090350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 32413.5 Da PI: 6.366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 112 | 162 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Medtr8g090350.1 112 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAFAYDNAAYKLRGE 162 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.19E-33 | 111 | 170 | No hit | No description |
PROSITE profile | PS51032 | 22.945 | 112 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 112 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-34 | 112 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-23 | 112 | 170 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-13 | 113 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MATTINMYNS NKNMTHGFLD PYNEEELMKA LEPFMKTSSS SSISEQSPLT PNLNPNYGIQ 60 ASSIGLNQLT PSQILQIQTQ FQTRQQQQQN KPLTQKPVPM KYFGIPSKPT KLYRGVRQRH 120 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAF AYDNAAYKLR GEFSRLNFPH MRFHGSYNPL 180 PSSVDSKLQA ICETLAISQK QGNTEKPCSS VEDVKPLVHV PAQSMGEFVF EDFKAFSSMS 240 DECSLGLSSP ESGLTFLDFS DSSQWDEVEN FGLKKFPSVE IDWEAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 111 | 169 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16530 | 1e-154 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g090350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU443966 | 8e-93 | GU443966.1 Trifolium repens clone BAC 113f04 bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446832.1 | 0.0 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 2e-83 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A072TTP8 | 0.0 | A0A072TTP8_MEDTR; Ethylene response factor | ||||
STRING | XP_004504059.1 | 1e-139 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 1e-67 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g090350.1 |
Entrez Gene | 25501933 |
Publications ? help Back to Top | |||
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