PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g088650.3
Common NameMTR_8g088650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 378aa    MW: 42536.9 Da    PI: 8.4117
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g088650.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.55.8e-082432891763
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Medtr8g088650.3 243 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 289
                      89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.4E-4232291IPR004827Basic-leucine zipper domain
CDDcd147032.85E-16236282No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-8243285No hitNo description
SuperFamilySSF579592.56E-5243285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MANSKSSSGV RNLMYPGRHA HALLPPKSPF PSTSQAYADY VSNPTVGPKP VNKPREGNSH  60
HQRTSSESHL IEEQPSWLDD LLNEPDTPVR RGGHRRSSSD SFAYIDNINA SNINYADHDE  120
YKYKNLSIPA WSPPDFDRNK DARHVPMYAE INAAKQRNRS WDSFSNMSGV PSGKDNVAFQ  180
RSGSPTPCTL YEPDRILLTA NENHDSLEAG VQDTKSPFEK KDGLHAKSSA SETDSKRAKQ  240
QFAQRSRVRK LQYIAELERN VQALQAEGSE VSAELEFLNQ QNLILSMENK ALKQRLESLA  300
QEQLIKYLEQ EVLEREIGRL RGMYQQHLQQ AQQPQQQPSG SHRRTNSRDL DSQFANLSLK  360
HKDTNSGHDP ANGALRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.31380.0flower| glandular trichome| leaf| pod| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g088650.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1297150.0AC129715.48 Medicago truncatula clone mth2-36p23, complete sequence.
GenBankAC1530000.0AC153000.5 Medicago truncatula clone mth2-94c2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629951.10.0uncharacterized protein At4g06598
RefseqXP_024628502.10.0uncharacterized protein At4g06598
TrEMBLG7L8T70.0G7L8T7_MEDTR; BZIP transcription factor
STRINGAET044270.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-105bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]