PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr8g086410.4 | ||||||||
Common Name | MTR_8g086410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 429aa MW: 49047.8 Da PI: 6.9747 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.4e-31 | 112 | 165 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Medtr8g086410.4 112 PRLRWTPDLHHSFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 165 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 108 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.579 | 108 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-14 | 110 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-22 | 112 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-8 | 113 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 429 aa Download sequence Send to blast |
MNMSDGYEKQ ENERSTGKSE EHGEDTSMGS SSHNKCSISF DLNEEASRSD QDVNNEENDE 60 ACDHELVNNG DDDDEKLAKD DDEGSSSSTK RSSGSNERRR NGVRQYVRSK MPRLRWTPDL 120 HHSFMHAVER LGGQERATPK LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE AGQVLSPTHR 180 STHELGSISH HVAHQSMIPH QHFKMANGGI VLETNYNQHS YNFHSLLHPS SLSHSHSHSH 240 SKPINSRHQE WYLNHQSWRP SYMSNELVMP STTLNTQGRS SITLNQQLQV KDNTVTTTLA 300 PMRPSQFLEE KRWPPLDIMN NHPYWKKNLH DHFSSDRTSL RPAEVSFGNN TRSRENISNI 360 NNDHNYFNSS KIEFDPPFRI KLNQETLLKD KQWVPDLQLS LSQTNGNNDG KSDGLRETKE 420 IDTKLSLS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 113 | 167 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr8g086410.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC139746 | 0.0 | AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence. | |||
GenBank | AC165431 | 0.0 | AC165431.9 Medicago truncatula clone mth2-117b21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446647.1 | 0.0 | uncharacterized protein LOC11419043 isoform X2 | ||||
TrEMBL | A0A072TT31 | 0.0 | A0A072TT31_MEDTR; MYB-like transcription factor family protein | ||||
STRING | AET04250 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr8g086410.4 |
Entrez Gene | 11419043 |
Publications ? help Back to Top | |||
---|---|---|---|
|