PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g086410.3 | ||||||||
Common Name | MTR_8g086410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 436aa MW: 49917.8 Da PI: 7.0777 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.1 | 4.1e-28 | 112 | 164 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LH++F++ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ ++ Medtr8g086410.3 112 PRLRWTPDLHHSFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQVHK 164 8*************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.105 | 108 | 168 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 108 | 166 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-13 | 110 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-20 | 112 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 113 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MNMSDGYEKQ ENERSTGKSE EHGEDTSMGS SSHNKCSISF DLNEEASRSD QDVNNEENDE 60 ACDHELVNNG DDDDEKLAKD DDEGSSSSTK RSSGSNERRR NGVRQYVRSK MPRLRWTPDL 120 HHSFMHAVER LGGQERATPK LVLQLMNVRG LSIAHVKSHL QVHKTKFEMY RSKKLDEAGQ 180 VLSPTHRSTH ELGSISHHVA HQSMIPHQHF KMANGGIVLE TNYNQHSYNF HSLLHPSSLS 240 HSHSHSHSKP INSRHQEWYL NHQSWRPSYM SNELVMPSTT LNTQGRSSIT LNQQLQVKDN 300 TVTTTLAPMR PSQFLEEKRW PPLDIMNNHP YWKKNLHDHF SSDRTSLRPA EVSFGNNTRS 360 RENISNINND HNYFNSSKIE FDPPFRIKLN QETLLKDKQW VPDLQLSLSQ TNGNNDGKSD 420 GLRETKEIDT KLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-16 | 113 | 165 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 113 | 165 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 113 | 165 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 113 | 165 | 3 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-16 | 113 | 165 | 4 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g086410.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139746 | 0.0 | AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence. | |||
GenBank | AC165431 | 0.0 | AC165431.9 Medicago truncatula clone mth2-117b21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446648.1 | 0.0 | myb family transcription factor APL isoform X1 | ||||
Refseq | XP_024627454.1 | 0.0 | myb family transcription factor APL isoform X1 | ||||
TrEMBL | A0A072U4B3 | 0.0 | A0A072U4B3_MEDTR; MYB-like transcription factor family protein | ||||
STRING | AET04250 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g086410.3 |
Entrez Gene | 11419043 |
Publications ? help Back to Top | |||
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