PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g086410.1 | ||||||||
Common Name | MTR_8g086410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 427aa MW: 48802.5 Da PI: 6.9747 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99 | 3.4e-31 | 110 | 163 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Medtr8g086410.1 110 PRLRWTPDLHHSFMHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 163 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.579 | 106 | 166 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 106 | 164 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-14 | 108 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-22 | 110 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-8 | 111 | 162 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MSDGYEKQEN ERSTGKSEEH GEDTSMGSSS HNKCSISFDL NEEASRSDQD VNNEENDEAC 60 DHELVNNGDD DDEKLAKDDD EGSSSSTKRS SGSNERRRNG VRQYVRSKMP RLRWTPDLHH 120 SFMHAVERLG GQERATPKLV LQLMNVRGLS IAHVKSHLQM YRSKKLDEAG QVLSPTHRST 180 HELGSISHHV AHQSMIPHQH FKMANGGIVL ETNYNQHSYN FHSLLHPSSL SHSHSHSHSK 240 PINSRHQEWY LNHQSWRPSY MSNELVMPST TLNTQGRSSI TLNQQLQVKD NTVTTTLAPM 300 RPSQFLEEKR WPPLDIMNNH PYWKKNLHDH FSSDRTSLRP AEVSFGNNTR SRENISNINN 360 DHNYFNSSKI EFDPPFRIKL NQETLLKDKQ WVPDLQLSLS QTNGNNDGKS DGLRETKEID 420 TKLSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 111 | 165 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 111 | 165 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g086410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139746 | 0.0 | AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence. | |||
GenBank | AC165431 | 0.0 | AC165431.9 Medicago truncatula clone mth2-117b21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013446647.1 | 0.0 | uncharacterized protein LOC11419043 isoform X2 | ||||
TrEMBL | A0A072TT31 | 0.0 | A0A072TT31_MEDTR; MYB-like transcription factor family protein | ||||
STRING | AET04250 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g086410.1 |
Entrez Gene | 11419043 |
Publications ? help Back to Top | |||
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