PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g086290.1 | ||||||||
Common Name | MTR_8g086290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 20629.5 Da PI: 6.2871 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.7e-23 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e ++n+qvtfskRr+g++ KA+EL++LCd+ +a+i+fs+ gkl+ + Medtr8g086290.1 20 KLEKETNKQVTFSKRRQGLFRKASELCTLCDVHAAIIVFSPAGKLHCF 67 56899****************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.0E-32 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.918 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-27 | 12 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.49E-32 | 12 | 83 | No hit | No description |
PRINTS | PR00404 | 8.3E-21 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-23 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-21 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MNMDNLRKKN TGRRKIEIKK LEKETNKQVT FSKRRQGLFR KASELCTLCD VHAAIIVFSP 60 AGKLHCFGEP NTDQILNSYI NGTIEFDVSN STGNSSTYKE YNKQYEEALK VLEMEKQKLA 120 DVENLTKIWN MGNWWNESID EMNSDQLEEF MESISELKRK LLEKADEHAN TMMFSML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-14 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-14 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-14 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-14 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g086290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139746 | 0.0 | AC139746.15 Medicago truncatula clone mth2-17b20, complete sequence. | |||
GenBank | AC148177 | 0.0 | AC148177.13 Medicago truncatula clone mth2-4c9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629764.1 | 1e-129 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7LIR5 | 1e-128 | G7LIR5_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AET04240 | 1e-129 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g086290.1 |
Entrez Gene | 11411373 |
Publications ? help Back to Top | |||
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