PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g085960.1
Common NameMTR_8g085960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 239aa    MW: 27198.6 Da    PI: 7.8591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g085960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-172373155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++ GVr++  +g+W+AeI+d s+   + r +lg++ taeeAa+a+++a+  l+g
  Medtr8g085960.1 23 SKFVGVRQRA-SGKWAAEIKDTSK---NIRMWLGTYKTAEEAARAYDEAAFLLRG 73
                     79*****999.7*********544...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-192382IPR016177DNA-binding domain
CDDcd000184.54E-312380No hitNo description
PfamPF008475.6E-122373IPR001471AP2/ERF domain
SMARTSM003803.6E-322487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-262481IPR001471AP2/ERF domain
PROSITE profilePS5103219.9152481IPR001471AP2/ERF domain
PRINTSPR003676.7E-72536IPR001471AP2/ERF domain
PRINTSPR003676.7E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDYQNQKSNE NKHGEKLMMK NRSKFVGVRQ RASGKWAAEI KDTSKNIRMW LGTYKTAEEA  60
ARAYDEAAFL LRGTNTRTNF STTHSIPTNS PISLKLKNLL HRKSISNLSQ SKNQCTLMSS  120
SLQGAPIDNS IMVMENENKS SCSSEESKSL FWVQNQLVSE YNPYGVDMNM MNCSIGITPN  180
TLQIDYSWPL PQQRINELPT LNDSVNVYGM NECYVEGTYE SKYEYDVNYP LSHLFCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-162580359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-162580662ATERF1
3gcc_A8e-162580662ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root hairs and leaves. {ECO:0000269|PubMed:17827349}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g085960.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520530.0AC152053.34 Medicago truncatula clone mth2-35e5, complete sequence.
GenBankAC1712670.0AC171267.17 Medicago truncatula clone mth2-17i7, complete sequence.
GenBankAC2313420.0AC231342.7 Medicago truncatula clone mth2-33p5, complete sequence.
GenBankEU0388040.0EU038804.1 Medicago truncatula ERN3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629734.21e-180ethylene-responsive transcription factor RAP2-11
SwissprotA9Y0K90.0ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A396GVG81e-178A0A396GVG8_MEDTR; Putative transcription factor AP2-EREBP family
STRINGAET042101e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-26related to AP2 11
Publications ? help Back to Top
  1. Andriankaja A, et al.
    AP2-ERF transcription factors mediate Nod factor dependent Mt ENOD11 activation in root hairs via a novel cis-regulatory motif.
    Plant Cell, 2007. 19(9): p. 2866-85
    [PMID:17827349]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]