PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g085960.1 | ||||||||
Common Name | MTR_8g085960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 27198.6 Da PI: 7.8591 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.5e-17 | 23 | 73 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr++ +g+W+AeI+d s+ + r +lg++ taeeAa+a+++a+ l+g Medtr8g085960.1 23 SKFVGVRQRA-SGKWAAEIKDTSK---NIRMWLGTYKTAEEAARAYDEAAFLLRG 73 79*****999.7*********544...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-19 | 23 | 82 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.54E-31 | 23 | 80 | No hit | No description |
Pfam | PF00847 | 5.6E-12 | 23 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-32 | 24 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 24 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.915 | 24 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDYQNQKSNE NKHGEKLMMK NRSKFVGVRQ RASGKWAAEI KDTSKNIRMW LGTYKTAEEA 60 ARAYDEAAFL LRGTNTRTNF STTHSIPTNS PISLKLKNLL HRKSISNLSQ SKNQCTLMSS 120 SLQGAPIDNS IMVMENENKS SCSSEESKSL FWVQNQLVSE YNPYGVDMNM MNCSIGITPN 180 TLQIDYSWPL PQQRINELPT LNDSVNVYGM NECYVEGTYE SKYEYDVNYP LSHLFCFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-16 | 25 | 80 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-16 | 25 | 80 | 6 | 62 | ATERF1 |
3gcc_A | 8e-16 | 25 | 80 | 6 | 62 | ATERF1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root hairs and leaves. {ECO:0000269|PubMed:17827349}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g085960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152053 | 0.0 | AC152053.34 Medicago truncatula clone mth2-35e5, complete sequence. | |||
GenBank | AC171267 | 0.0 | AC171267.17 Medicago truncatula clone mth2-17i7, complete sequence. | |||
GenBank | AC231342 | 0.0 | AC231342.7 Medicago truncatula clone mth2-33p5, complete sequence. | |||
GenBank | EU038804 | 0.0 | EU038804.1 Medicago truncatula ERN3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629734.2 | 1e-180 | ethylene-responsive transcription factor RAP2-11 | ||||
Swissprot | A9Y0K9 | 0.0 | ERN3_MEDTR; Ethylene-responsive transcription factor ERN3 | ||||
TrEMBL | A0A396GVG8 | 1e-178 | A0A396GVG8_MEDTR; Putative transcription factor AP2-EREBP family | ||||
STRING | AET04210 | 1e-179 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15646 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-26 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g085960.1 |
Entrez Gene | 11408318 |
Publications ? help Back to Top | |||
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