PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g080800.1
Common NameMTR_8g080800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 962aa    MW: 107600 Da    PI: 5.6601
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g080800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.77e-56131292117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e ++rwlk+ e++ iL+n+ek+++t+e++++p+sgsl+L+nr+++r+frkDG+ w+kk+dg++v E+he+LKvg+ve+++cyYah+e+nptf
  Medtr8g080800.1  13 YQEaQRRWLKPAEVMYILQNHEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRKDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTF 106
                      566699**************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrr+yw+L+ e+++ivlvhy+++
  Medtr8g080800.1 107 QRRSYWMLNPEFDHIVLVHYRDT 129
                      ********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3399135IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7612130IPR005559CG-1 DNA-binding domain
PfamPF038593.5E-4815128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.0E-9396488IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.47E-18403487IPR014756Immunoglobulin E-set
PfamPF018333.0E-8403486IPR002909IPT domain
CDDcd001023.29E-5403488No hitNo description
Gene3DG3DSA:1.25.40.203.1E-15596692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.663598663IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.01E-15599692IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-12603690No hitNo description
PfamPF127964.0E-7613691IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.06631663IPR002110Ankyrin repeat
SMARTSM002480.0038631660IPR002110Ankyrin repeat
SMARTSM0001591748770IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.895749778IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.98E-7796854IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.2806828IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206807836IPR000048IQ motif, EF-hand binding site
PfamPF006120.02809827IPR000048IQ motif, EF-hand binding site
SMARTSM000154.2E-4829851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359830855IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-5832851IPR000048IQ motif, EF-hand binding site
SMARTSM002483300874903IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MSSGYEYDID DLYQEAQRRW LKPAEVMYIL QNHEKYQFTQ EPPQQPTSGS LFLFNRRVLR  60
FFRKDGHAWR KKRDGRAVGE AHERLKVGNV EAINCYYAHG EQNPTFQRRS YWMLNPEFDH  120
IVLVHYRDTS EGRLSSGPGT QLSPGSSAYS PTPSSYSTQN PGSTSVVYDA YEPNQSFSSP  180
GSAEVTSYNN GMSYSEGAEA ESETSADFKV TQALRRLEVQ LSLNEDNIEE IAPFYDEHEA  240
ARDSKPQNHQ GMMCKQEESA ALSGPVNQGL FYDGYNGRQG DSGESYHELL DHDFPDENEK  300
TLSWKNVYMP AAGNESSPSS SLREPVTNPE NYCWTNFNTD NAGNSVFSLP QGVGEVTLPP  360
YSSLDETQES RSSYYSTLFD QSQIGASHDA GSSLTVSQKQ KFTIKAVSPE WGYSSETTKV  420
FIIGSFLCHP SDSAWACMLG DVEVPVELVQ DGVMCCEVPS HIPGKVTLCI SSGNRESCSE  480
VREFEYRDKI KKFTDPAPLE REATRTPDEL LLLVRFGQML LSESSVSNDN NESGIFIKQK  540
ADDDSWSHII EALLFGSENS SGTINWLLEE LLKDKLQVWL TSRSREVDEE MGCSLSKKEQ  600
GIIHMVAGLG FEWALNPILS CGVNINFRDV NGWTALHWAA RFGREKMVAS LIASGASAGA  660
VTDPSAQDPI GKTAASIAAS SRHKGLAGYL SEVALTSHLS SLTLEENELS KSSAELQADL  720
TVSNVSKENI AFSEDRTSLK DTLAAVRNTT QAAARIQAAF RSHSFRKRRT KETNGVMSGH  780
DISASGVGDM PELYAMSKLA FRNSREHNSA ALSIQKKYRG WKGRKDFLSL RQKVVKIQAH  840
VRGYQVRKHY KVLWAVGILD KVVLRWRRKG VGLRGFKPEM QVNENEDEDI LKVFRKQKVD  900
VEIEKAVSRV LSMAKSPDAR EQYHRMLEKY RQAKAELAQT SEEKSVTTSV EDFLNMDDDF  960
Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g080800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446586.20.0calmodulin-binding transcription activator 4 isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A396GUL60.0A0A396GUL6_MEDTR; Putative transcription factor CG1-CAMTA family
STRINGXP_004504403.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]