PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g080680.1
Common NameMTR_8g080680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family SBP
Protein Properties Length: 399aa    MW: 44941.2 Da    PI: 7.6599
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g080680.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.46.2e-36132207277
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      CqvegC  +ls+ak+yh + +vCe h+k+p+v+++gle+rfCqqCsrfh+l efD +k+sCrr+L++hn+rrrk +
  Medtr8g080680.1 132 CQVEGCGLNLSSAKDYHCKRRVCESHAKSPMVVIDGLERRFCQQCSRFHDLFEFDGKKKSCRRQLSNHNARRRKYH 207
                      *************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-29127193IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.744129206IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-34130209IPR004333Transcription factor, SBP-box
PfamPF031102.4E-30132205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDLNAISPSS QWEWDHLPLL DTKATENQKL QPPNWTMELD PEINFGLYDT PVGSGSSGSD  60
LIHGSAFNAP KFSCVSGEPL LNPRLGKRMY FEEVCPESDS KNLSFSRDLM SSLILEKKCK  120
SNGQNLQCPP HCQVEGCGLN LSSAKDYHCK RRVCESHAKS PMVVIDGLER RFCQQCSRFH  180
DLFEFDGKKK SCRRQLSNHN ARRRKYHRQA VQSSQSALSY SRSDGKQQMS PFTNSKTATN  240
LAWQNMHNSK LPQAKDFLLK PSKDNIDTPS TVTMLSHDSN FHFTSKILAT KSVNPGVEDF  300
MNFSDTNATQ DFTCALSLLS TNQWDSYATK SISQEHSNRP TSPFQATTHA MSQCIPLASS  360
EPCCGHHDQY VNSNIWISNS ADSNHFQKFQ LFREPYEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-231322051184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187204KKKSCRRQLSNHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g080680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024627422.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A072TSV90.0A0A072TSV9_MEDTR; Squamosa promoter-binding-like protein
STRINGXP_004504410.11e-175(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-44squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]