PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g079620.1 | ||||||||
Common Name | MTR_8g079620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 25825.4 Da PI: 6.5937 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.6 | 7.5e-37 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l rkC Cvlapyfp+++p++f vh +FG++nv++llk+l+ +++e+a++slvyeA+a++rdP++G++g ++lq +l+++++el Medtr8g079620.1 8 PCAACKHLHRKCHLTCVLAPYFPKDNPERFIKVHSVFGMRNVTNLLKKLDVSHHEQAVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTEL 101 7********************************************************************************************* PP DUF260 95 allkee 100 +++k+e Medtr8g079620.1 102 KSVKNE 107 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.424 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-35 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDREIIRPCA ACKHLHRKCH LTCVLAPYFP KDNPERFIKV HSVFGMRNVT NLLKKLDVSH 60 HEQAVESLVY EADAWLRDPI HGCAGPANDL QGRLNEAQTE LKSVKNELAK YLGPQVVESV 120 LAFPDCFGFK PNASPLTMTV GGGQLGFNQL PAAELTAQQL HNLEVLKQKL LSGPDGDDGL 180 AGFQMGADVD VPVRDSGLAG SQMLPHVPPV DAPSRADTFD NGSTSTSNQV RLPGSRNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-30 | 8 | 111 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-30 | 8 | 111 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g079620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148525 | 0.0 | AC148525.14 Medicago truncatula chromosome 8 clone mth2-24i13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629573.1 | 1e-178 | LOB domain-containing protein 28 | ||||
TrEMBL | G7LGC5 | 1e-176 | G7LGC5_MEDTR; LOB domain protein | ||||
STRING | AET04049 | 1e-177 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 8e-37 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g079620.1 |
Entrez Gene | 11408293 |
Publications ? help Back to Top | |||
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