PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g079580.1 | ||||||||
Common Name | MTR_8g079580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25189.1 Da PI: 5.8829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.5 | 1.8e-32 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk++rr+C + C lapyfpa++p++++ vh +FG+s+v+k+l++ + ++r+++++slvy+Aear+rd vyG+vg + l++ l+ ++ e Medtr8g079580.1 8 PCAACKHHRRRCDEAsCNLAPYFPADNPQRYNLVHSVFGRSKVSKILQEQDISHRKQVADSLVYQAEARLRDNVYGVVGPASFLEKTLKDVQDE 101 7***********8766****************************************************************************** PP DUF260 94 lallkeel 101 l+++k+el Medtr8g079580.1 102 LKKVKNEL 109 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.382 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-31 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAEEIIRPCA ACKHHRRRCD EASCNLAPYF PADNPQRYNL VHSVFGRSKV SKILQEQDIS 60 HRKQVADSLV YQAEARLRDN VYGVVGPASF LEKTLKDVQD ELKKVKNELI KYLDPEIIQE 120 VLSNPDRFGF APSPNQNPQG HLVSQQPPTL DQLTTSQIIH LLQLKENIVR SDTGINSSGG 180 GGGEGQHIGA PAADAVIAPS FDNGSTSSCQ IQLQGEQQQV QQQPDQQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-26 | 8 | 117 | 11 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-26 | 8 | 117 | 11 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g079580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148525 | 0.0 | AC148525.14 Medicago truncatula chromosome 8 clone mth2-24i13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629569.1 | 1e-168 | LOB domain-containing protein 36 | ||||
TrEMBL | G7LGC1 | 1e-167 | G7LGC1_MEDTR; LOB domain protein | ||||
STRING | AET04045 | 1e-167 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 2e-33 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g079580.1 |
Entrez Gene | 11417963 |
Publications ? help Back to Top | |||
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