PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g079502.1 | ||||||||
Common Name | MTR_8g079502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20569.5 Da PI: 9.6551 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.7 | 1.1e-21 | 12 | 53 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++ rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+ + Medtr8g079502.1 12 KDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGSR 53 67778*********************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.773 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-27 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.17E-31 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 4.1E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGRRKIEIEM VKDPNTRQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GSRPYSFGHP 60 GVDVVAAKYL QQETEPSDSQ ENPSSGAPDI EKLNLELGEV LAQIREGEKQ VETHDEIMNQ 120 NDVTKLSNLK ELRDSYKELQ DWIKLRLSDI EISGYMMLLA QDPVVGIKAK SAKRKRRRRR 180 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 1 | 83 | 1 | 82 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 177 | RKRRR |
2 | 173 | 179 | RKRRRRR |
3 | 174 | 179 | KRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g079502.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024628462.1 | 1e-132 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A072U3W4 | 1e-130 | A0A072U3W4_MEDTR; MADS-box transcription factor family protein | ||||
STRING | XP_004504539.1 | 6e-98 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-39 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g079502.1 |
Entrez Gene | 25501694 |
Publications ? help Back to Top | |||
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