PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g079492.3
Common NameMTR_8g079492
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 833aa    MW: 93355.3 Da    PI: 6.6404
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g079492.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-2444145199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g+ W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Medtr8g079492.3  44 FCKILTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 133
                      99*****************************86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Medtr8g079492.3 134 EKNQLLLGIRRA 145
                      99999****997 PP
2Auxin_resp120.21.6e-39170253183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Medtr8g079492.3 170 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 253
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-4729173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-4136159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-2143144No hitNo description
PROSITE profilePS5086313.05644146IPR003340B3 DNA binding domain
PfamPF023621.8E-2244145IPR003340B3 DNA binding domain
SMARTSM010194.7E-2444146IPR003340B3 DNA binding domain
PfamPF065071.2E-34170253IPR010525Auxin response factor
SuperFamilySSF542771.83E-6695774No hitNo description
PfamPF023091.3E-6695784IPR033389AUX/IAA domain
PROSITE profilePS5174522.627699783IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MHADTETDEV YAQMTLQPLN PEEQKEAYLP AELGTANKQP TNYFCKILTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFTQQPP AQELIARDLH GNDWKFKHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLLL GIRRASRPQH MMPSSVLSSD SMHLGLLAAA AHAAATNSRF  180
TIFYNPRASP SEFVIPLAKY VKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
SVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPLRL KRPWPPGLPS  300
FHGLKDDDFG MNSPLLWLRD ADRGLQTLNF QGMGVNPWMQ ARLDPSMMNM QPDMYQAMAA  360
AALQDMRTLD PSKQHPASLL QFQQPQNFSN GNAALMQNQM LQQSQPHQAF PKNQESQHPS  420
QSQAQTQQFQ QLLQHQHSFT NQNYHMQQQQ QQQQQQQQQQ QQQHQQQQQQ QSQQQQQVVD  480
HQQMSNAVST MSQFVSAPPS QSTQPMQAIS SIGHQQNFSD SNGNPVSPLH NMLGSFSNDE  540
TSHLLNFPRP NSWVPVQSST ARPSKRVAVD PLLSSGASHY VLPQVEQLGQ SQTTMSQNAI  600
TLPPFPGREC AIEGNTDPQN HLLFGFNIEP SSHLVYNEMS NLKRVNSNCD SSTAPFQSST  660
YLNTTGADSS LNPGLTHGVG ESGFMQTPEN GGQGNPQNKT FVKVYKSGSF GRSLDITKFS  720
NYPELRSELA RMFGLEGELE DPVRSGWQLV FVDQENDVLL LGDGPWPEFV NSVWCIKILS  780
PQEVQQMGTN GLELLNSAPT QRLSNGICDD YTGREDSRNL STGLTTVGSL DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1201274115388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98610.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g079492.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446498.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A072TSX90.0A0A072TSX9_MEDTR; Auxin response factor
STRINGXP_004504542.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]