PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g079492.2
Common NameMTR_8g079492
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 916aa    MW: 102334 Da    PI: 6.5382
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g079492.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.6e-24126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g+ W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Medtr8g079492.2 126 FCKILTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 215
                      99*****************************86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Medtr8g079492.2 216 EKNQLLLGIRRA 227
                      99999****997 PP
2Auxin_resp1201.9e-39252335183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Medtr8g079492.2 252 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 335
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-47111255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21125226No hitNo description
SMARTSM010194.7E-24126228IPR003340B3 DNA binding domain
PfamPF023622.0E-22126227IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056126228IPR003340B3 DNA binding domain
PfamPF065071.3E-34252335IPR010525Auxin response factor
PfamPF023091.5E-6778867IPR033389AUX/IAA domain
SuperFamilySSF542772.09E-6778857No hitNo description
PROSITE profilePS5174522.627782866IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVCLPADGS RVVYFPQGHS EQVAVSTNRE  60
VDTYIPNPSL PPQLICQLHN LTMHADTETD EVYAQMTLQP LNPEEQKEAY LPAELGTANK  120
QPTNYFCKIL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIARD LHGNDWKFKH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QHMMPSSVLS  240
SDSMHLGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML  300
FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPPGL PSFHAGLKDD DFGMNSPLLW LRDADRGLQT LNFQGMGVNP  420
WMQARLDPSM MNMQPDMYQA MAAAALQDMR TLDPSKQHPA SLLQFQQPQN FSNGNAALMQ  480
NQMLQQSQPH QAFPKNQESQ HPSQSQAQTQ QFQQLLQHQH SFTNQNYHMQ QQQQQQQQQQ  540
QQQQQQHQQQ QQQQSQQQQQ VVDHQQMSNA VSTMSQFVSA PPSQSTQPMQ AISSIGHQQN  600
FSDSNGNPVS PLHNMLGSFS NDETSHLLNF PRPNSWVPVQ SSTARPSKRV AVDPLLSSGA  660
SHYVLPQVEQ LGQSQTTMSQ NAITLPPFPG RECAIEGNTD PQNHLLFGFN IEPSSHLVYN  720
EMSNLKRVNS NCDSSTAPFQ SSTYLNTTGA DSSLNPGLTH GVGESGFMQT PENGGQGNPQ  780
NKTFVKVYKS GSFGRSLDIT KFSNYPELRS ELARMFGLEG ELEDPVRSGW QLVFVDQEND  840
VLLLGDGPWP EFVNSVWCIK ILSPQEVQQM GTNGLELLNS APTQRLSNGI CDDYTGREDS  900
RNLSTGLTTV GSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561335643388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98610.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g079492.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446499.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A072TTL50.0A0A072TTL5_MEDTR; Auxin response factor
STRINGXP_004504542.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]