PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g078480.2
Common NameMTR_8g078480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 840aa    MW: 91680.5 Da    PI: 6.9453
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g078480.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095966331954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Medtr8g078480.2 596 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 633
                      664459******************************88 PP

2BELL121.34e-39456527172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +r e+q++k+kLl++l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Medtr8g078480.2 456 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 527
                      589******************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.6E-81383525IPR006563POX domain
PfamPF075266.1E-52388524IPR006563POX domain
PROSITE profilePS5007112.568574637IPR001356Homeobox domain
SMARTSM003892.0E-9577641IPR001356Homeobox domain
CDDcd000869.10E-13577638No hitNo description
SuperFamilySSF466896.84E-17579644IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28580643IPR009057Homeodomain-like
PfamPF059204.3E-18594633IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MGIATTPSSI PSTFSNSSSI QNYHSSFNSS ILEKSQNSTN SMSQDYHHHH HQNHHQQGIF  60
AFSNGFERSN TPENNNPHQQ QQQIQRDKVR IQDFDSQQPP QPPPPPLIGN IEEEQEALPV  120
YETTGMLSEM FNFPHGASAA ELLEQQQQQQ QQQMASTRTP QAPHGIGNSS DWYGNRQTML  180
TDSKNHHNNR DSSSSSSIFH HQNHHQMSNI NAESAAAMQL FLMNPQTTRS PSPPPQPHPS  240
STNSSTLHML LPNPSTTNLQ GYNSGAGGSF GQFTWAQEGG GGGATSSHHQ LNNNQPEMAS  300
VVEGQGLSLS LSSSLQHHHS EDLRMGDAAA GGFLYYNQGG PGTSYKNLGS VHHHHLQGGG  360
LGQINHIHQG HVGFGSSSSS SSLGVVNVLR NSKYVKAAQE LLEEFCSVGR GQFKKNKFSR  420
QLSNPNSNQG GGGGSVGGGG ASSSSSKDVS PLSPADRIEH QRRKVKLLTM LDEVDRRYSH  480
YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK DAITAQLKHS CELLGEKDGV  540
GTSGLTKGET PRLKLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL  600
HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE DMYQQELKEA EGSSEGDQED  660
RENKNPQSST SNNNNNTSGH LSTTTTTTNI IAQTPTQPST TTSTTTTPQP TSNNNQLMRS  720
NNTINANEND PSLTPLINRQ GFSENQAMLL QQPSSTVKTT VSEVAPPISD SMAIDDTCRH  780
GSFVSAEYGT TTGTSADIGS TLIRFGTNTS GDVSLTLGLR HAGNLPDKTS FSLTDFGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16583640562Homeobox protein Meis2
3k2a_B4e-16583640562Homeobox protein Meis2
4xrm_A4e-16583640562Homeobox protein Meis2
4xrm_B4e-16583640562Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g078480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482410.0AC148241.21 Medicago truncatula chromosome 8 clone mth2-14m21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629527.20.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-159BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLG7LFL60.0G7LFL6_MEDTR; BEL1-related homeotic protein
STRINGAET040030.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-146BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]