PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g078480.2 | ||||||||
Common Name | MTR_8g078480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 840aa MW: 91680.5 Da PI: 6.9453 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3e-09 | 596 | 633 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Medtr8g078480.2 596 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 633 664459******************************88 PP | |||||||
2 | BELL | 121.3 | 4e-39 | 456 | 527 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Medtr8g078480.2 456 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 527 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.6E-81 | 383 | 525 | IPR006563 | POX domain |
Pfam | PF07526 | 6.1E-52 | 388 | 524 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 574 | 637 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-9 | 577 | 641 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.10E-13 | 577 | 638 | No hit | No description |
SuperFamily | SSF46689 | 6.84E-17 | 579 | 644 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 580 | 643 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 594 | 633 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MGIATTPSSI PSTFSNSSSI QNYHSSFNSS ILEKSQNSTN SMSQDYHHHH HQNHHQQGIF 60 AFSNGFERSN TPENNNPHQQ QQQIQRDKVR IQDFDSQQPP QPPPPPLIGN IEEEQEALPV 120 YETTGMLSEM FNFPHGASAA ELLEQQQQQQ QQQMASTRTP QAPHGIGNSS DWYGNRQTML 180 TDSKNHHNNR DSSSSSSIFH HQNHHQMSNI NAESAAAMQL FLMNPQTTRS PSPPPQPHPS 240 STNSSTLHML LPNPSTTNLQ GYNSGAGGSF GQFTWAQEGG GGGATSSHHQ LNNNQPEMAS 300 VVEGQGLSLS LSSSLQHHHS EDLRMGDAAA GGFLYYNQGG PGTSYKNLGS VHHHHLQGGG 360 LGQINHIHQG HVGFGSSSSS SSLGVVNVLR NSKYVKAAQE LLEEFCSVGR GQFKKNKFSR 420 QLSNPNSNQG GGGGSVGGGG ASSSSSKDVS PLSPADRIEH QRRKVKLLTM LDEVDRRYSH 480 YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK DAITAQLKHS CELLGEKDGV 540 GTSGLTKGET PRLKLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL 600 HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE DMYQQELKEA EGSSEGDQED 660 RENKNPQSST SNNNNNTSGH LSTTTTTTNI IAQTPTQPST TTSTTTTPQP TSNNNQLMRS 720 NNTINANEND PSLTPLINRQ GFSENQAMLL QQPSSTVKTT VSEVAPPISD SMAIDDTCRH 780 GSFVSAEYGT TTGTSADIGS TLIRFGTNTS GDVSLTLGLR HAGNLPDKTS FSLTDFGGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 583 | 640 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 583 | 640 | 5 | 62 | Homeobox protein Meis2 |
4xrm_A | 4e-16 | 583 | 640 | 5 | 62 | Homeobox protein Meis2 |
4xrm_B | 4e-16 | 583 | 640 | 5 | 62 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g078480.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148241 | 0.0 | AC148241.21 Medicago truncatula chromosome 8 clone mth2-14m21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629527.2 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-159 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | G7LFL6 | 0.0 | G7LFL6_MEDTR; BEL1-related homeotic protein | ||||
STRING | AET04003 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-146 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g078480.2 |
Entrez Gene | 11411247 |
Publications ? help Back to Top | |||
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