PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g077940.1
Common NameMTR_8g077940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 543aa    MW: 60492.4 Da    PI: 5.6526
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g077940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.98.7e-901805412374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L+++A+++++++l+laqa+L+rl+++ +sp+g+p++R+a++f+ AL++ l++      ++ pp+ +s  + ++++  +k+fs +sPi+ fs
  Medtr8g077940.1 180 IEELIRAADCFDNNHLQLAQAILERLNQRlRSPTGKPLHRAAFHFKDALQSLLSG----SNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFS 269
                      679*************************99************************9....55667888888888********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       +t+Nqa+lea++g+  +H++Df+i+ G+Q+++L++++a+++ +g+p lRiT+v+++e   + e + ++e+L++fA+ lg++++ +++  +++e
  Medtr8g077940.1 270 IFTTNQALLEALHGSLYMHVVDFEIGLGIQYASLMKEIAEKAvNGSPLLRITAVVPEE--YAVESRLIRENLNQFAHDLGIRVQVDFVPLRTFE 361
                      *****************************************99*************66..99999**********************9999*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpre 278
                      ++++++ r+  gE++a+ l  +++  l     +e  + ++L+ v+++ P vvv+v+ e  ++   ++sF ++++++le+ys++++sl+a++++ 
  Medtr8g077940.1 362 TVSFKAVRFVDGEKTAILLTPAIFCRLG----SE-GTAAFLSDVRRITPGVVVFVDGEgwTEAaAAASFRRGVVNSLEFYSMMLESLDASVAAG 450
                      ***********************99992....22.25789******************543444677***********************9998 PP

             GRAS 279 s..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                         e+++ +E  ll+++i  +v ++g++          Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v +++++lvl W++r++v++
  Medtr8g077940.1 451 GggEWARRIEMLLLRPKIIAAVEAAGRR-------TTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVAT 537
                      8889**********************98.......789******************************************************** PP

             GRAS 371 SaWr 374
                      SaWr
  Medtr8g077940.1 538 SAWR 541
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.696153521IPR005202Transcription factor GRAS
PfamPF035143.0E-87180541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRVPPPAVSS SSSSPQPKLT TTQNIVVNVP TPNPTPTPTT TTLCYEPRSV LELCRSPSPE  60
KKPSQQEQEH NPEVEQEDHA SLPNLDWWDS IMKDLGLQDD SSTPIIPLLK NTNNTSEIYP  120
NPSQDQFDQT QDFTSLSDIY SNNQNLAYNY PNTNTNLDHL VNDFNNNQPN NNTNSNWDFI  180
EELIRAADCF DNNHLQLAQA ILERLNQRLR SPTGKPLHRA AFHFKDALQS LLSGSNRTNP  240
PRLSSMVEIV QTIRTFKAFS GISPIPMFSI FTTNQALLEA LHGSLYMHVV DFEIGLGIQY  300
ASLMKEIAEK AVNGSPLLRI TAVVPEEYAV ESRLIRENLN QFAHDLGIRV QVDFVPLRTF  360
ETVSFKAVRF VDGEKTAILL TPAIFCRLGS EGTAAFLSDV RRITPGVVVF VDGEGWTEAA  420
AAASFRRGVV NSLEFYSMML ESLDASVAAG GGGEWARRIE MLLLRPKIIA AVEAAGRRTT  480
PWREAFYGAG MRPVQLSQFA DFQAECLLAK VQIRGFHVAK RQAELVLFWH ERAMVATSAW  540
RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2318554025378Protein SCARECROW
5b3h_A2e-2318554024377Protein SCARECROW
5b3h_D2e-2318554024377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.133210.0leaf| pod| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g077940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484840.0AC148484.17 Medicago truncatula chromosome 8 clone mth2-46g10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003629479.10.0scarecrow-like protein 15
SwissprotO232101e-165SCL15_ARATH; Scarecrow-like protein 15
TrEMBLG7LEV20.0G7LEV2_MEDTR; GRAS family transcription factor
STRINGAET039550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-162GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]