PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g077360.1 | ||||||||
Common Name | MTR_8g077360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8609.64 Da PI: 8.9843 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 4 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ + +W+ +a+ +g ++ +++ks++ Medtr8g077360.1 4 SWTARQNKLFEQALALYDREtpeRWHNVAKVVG--KSVEDVKSHY 46 6*****************88************8..9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.69 | 1 | 54 | IPR017884 | SANT domain |
CDD | cd00167 | 5.50E-5 | 4 | 50 | No hit | No description |
SuperFamily | SSF46689 | 1.1E-11 | 4 | 58 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MATSWTARQN KLFEQALALY DRETPERWHN VAKVVGKSVE DVKSHYEILK EDVQRIEHGH 60 IPFPRYKTNT NNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-25 | 5 | 72 | 11 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g077360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC162787 | 1e-121 | AC162787.39 Medicago truncatula chromosome 8 clone mth2-192c6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629426.1 | 2e-49 | protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 9e-28 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | G7LDY7 | 4e-48 | G7LDY7_MEDTR; MYB family transcription factor | ||||
STRING | AET03902 | 7e-49 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-30 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g077360.1 |
Entrez Gene | 11408177 |
Publications ? help Back to Top | |||
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