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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Medtr8g076620.1 |
| Common Name | MTR_8g076620 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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| Family |
SRS |
| Protein Properties |
Length: 332aa MW: 36121.5 Da PI: 7.2955 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Medtr8g076620.1 | genome | Mt | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 207.3 | 4.2e-64 | 117 | 253 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97
++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpa++rrerqqql+++ +++ skr+r+ ++al st + +
Medtr8g076620.1 117 EGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPASRRRERQQQLSSSP------LQRDISKRPRDG----SNALVST----RNFH 196
6789***********************************************999864......467899999985....3344333....3555 PP
DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ le +++P+ vss+a frcvrvss+dd+++ +aYqtav+igGh+fkGiLyd G+e+
Medtr8g076620.1 197 TGLEEANFPAVVSSPAEFRCVRVSSIDDADDRYAYQTAVNIGGHLFKGILYDFGPES 253
6789999************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MAGLFSLGGG GRGNQGEESQ QQGHIPPQET LFWYNKNDDV SSYRGNLELW NQHQQHQQHQ 60
QQDDMHAARP FFPRDLYGPG VGLGVGPSRV SSDDHEHQSS SRSAAFTMAM RSSSSAEGIS 120
CQDCGNQAKK DCPHMRCRTC CKSRGFQCQT HVKSTWVPAS RRRERQQQLS SSPLQRDISK 180
RPRDGSNALV STRNFHTGLE EANFPAVVSS PAEFRCVRVS SIDDADDRYA YQTAVNIGGH 240
LFKGILYDFG PESSTNNSNN NSNYNNSNYM IGETSGGGGV GVAQPLNLIA DSDTTVVASS 300
GALVDPSSLY SAPINAFMTA SGTQFFPRPR S*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. Detected throughout the youngest flower primordium. Later relocalizes towards the regions of the presumptive sepal anlagen and remains in sepal primordia until just after their emergence. Also observed on the abaxial side of the young floral meristem. Present in the newly arisen gynoecial primordium. Restricted to the apical parts of the carpels as the open-ended gynoecial cylinder elongates vertically. In the apical regions of the gynoecium, confined to a zone in the interphase between the style and the stigma and fades out later. Within the gynoecium, accumulates in ovule primordia, and, as the ovules developed, restricted to the epidermis of the developing funiculi, to the outer, but not the inner, integuments and to the tip of the nucellus. Also present in the cell layer of the septum that faces the ovary. In the embryo, detected in the cotyledon primordia during late globular to mid heart stage. In addition, transiently expressed in petal and stamen primordia and in the tapetum of the anthers. {ECO:0000269|PubMed:12361963}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers, seeds and seedlings. {ECO:0000269|PubMed:12361963}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC160013 | 3e-37 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
| GenBank | AC183777 | 3e-37 | AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 1e-59 | Lateral root primordium (LRP) protein-related |
