PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g069360.1
Common NameMTR_8g069360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 431aa    MW: 49469.7 Da    PI: 10.8415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g069360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-184392255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +gr++AeIrdp     +   r +lg+f+tae+Aa a++ a+++++g
  Medtr8g069360.1 43 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEQAACAYDSAALSMRG 92
                     69*******.**********6.....335999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-3343106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2143100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-304399IPR001471AP2/ERF domain
CDDcd000181.20E-294399No hitNo description
PROSITE profilePS5103222.40543100IPR001471AP2/ERF domain
PfamPF008474.3E-114392IPR001471AP2/ERF domain
PRINTSPR003674.7E-94455IPR001471AP2/ERF domain
PRINTSPR003674.7E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEQALRTLNG MPPMEEQDNH HHHKKTSSSS STSATNKTGA TVRYRGVRRR PWGRYAAEIR  60
DPHSKERRWL GTFDTAEQAA CAYDSAALSM RGSKARTNFF YPETTEQNLL HPFHNHKQQK  120
SQHRHVTKFN SGDFLNHTCS NPNPCLVPPF VQNKPNNTIS SSSSSNVNIT EEIIDEDSEF  180
FPRESSGLLE EIVYKFMKSS KTTNNEKKVK TNSFGSISQP ISHNMVPMLE GTFGTVSFDQ  240
QGFPMQQFET INNGFNFINT NEATMGWKVD NPEITRKVLK AQIAQGRAKS SPIPGGSIPL  300
GLRYKWQPIK GAFNAQVKKN QSRAIITNTS EISLSCQLDQ NSENHQEHQE QSQTLDFQIH  360
QKGIKIIISF CNSQRFFANL HHRINPFAIP VRIHHRWRRI QTRSRRIRNL RRRRKEARFK  420
PAKKMKKQNQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-194499359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-1943991471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410415RRRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr8g069360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743560.0AC174356.5 Medicago truncatula chromosome 8 clone mth2-18j17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192650.15e-76ethylene-responsive transcription factor ESR2-like
TrEMBLG7LJC00.0G7LJC0_MEDTR; AP2 domain class transcription factor
STRINGAET034160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.15e-21ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]