PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr8g068210.1

Common Name

MTR_8g068210

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 339aa MW: 37036.1 Da PI: 8.2594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr8g068210.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	30	87	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvP+Ggg+rk++k Medtr8g068210.1 30 VVIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKL 87 5689**************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	20	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	31	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MVAPNHKNTQ DHENQQGSSS ETKITDQQKV VIKCPRCDSP NTKFCYYNNY SLTQPRHFCK 60 TCRRYWTNGG SLRNVPIGGG CRKKQKLKHS STPSQAINKY STSPSLDFHL GSLPLPLSLP 120 FSSKPFYYNQ FSSIGGVSSS NTCVSTTSAS SFHLDPNGLN LYPFSSSNGG GFINGGNENA 180 AIQGMNFMNV STSANNTNCT SLASSIESLS CRNQDLHLKL QQQRLATLFE DNNRKESGTV 240 LLSQVSIEKP QPILFQNLEI SKAEMFQVGG GGDSRKEGAS EWFFGMNSYS SVMAPTTTTD 300 LSVCINGDHD PNGNNNWINN GVHAWGDVQQ QQPYTALP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr8g068210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174360	0.0	AC174360.8 Medicago truncatula chromosome 8 clone mth2-31a5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003628883.1	0.0	dof zinc finger protein DOF5.7
TrEMBL	G7LIJ3	0.0	G7LIJ3_MEDTR; Dof domain zinc finger protein
STRING	AET03359	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-33	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Medtr8g068210.1
Entrez Gene	11424611

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]